Rhodovulum sulfidophilum: NHU_03636
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Entry
NHU_03636 CDS
T04143
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHU_03636 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsu03019
]
NHU_03636 (pnp)
03016 Transfer RNA biogenesis [BR:
rsu03016
]
NHU_03636 (pnp)
Enzymes [BR:
rsu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NHU_03636 (pnp)
Messenger RNA biogenesis [BR:
rsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NHU_03636 (pnp)
Transfer RNA biogenesis [BR:
rsu03016
]
Prokaryotic type
tRNA degradation factors
NHU_03636 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
BAQ70768
UniProt:
A0A0D6B6K5
LinkDB
All DBs
Position
3765266..3767407
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AA seq
713 aa
AA seq
DB search
MFNVTTKSMQWGEETLTLETGKVARQADGSVIATLGETTVMANVTFAKEQKEGQGFFPLT
VHYQEKYYAAGKVPGGFFKREARPSEKETLTARLIDRPIRPLFVPGFKNEVLVMCTVLSH
DLVNDPDIVAMIAASAALTISGVPFMGPIAGCRVGFVDGEYVLNPDVDDMQGLRTNPDQR
LDLVVAGTRDAVMMVESEAYELTEAEMLGAVTFAHDNIKPVCDLIISLAEAAAKEPFDFT
PPDYSALYEAVKAVGEEKMRAAYAITDKQARVAAVSAAKDEIKASLSEEQLEDTNLGSAM
KKLESTVLRSDVVKHGRRIDGRALTQVRPIECEVGLLPRTHGSALFTRGETQGLIVTTLG
TGDDEQIIDALHGNFRSNFLLHYNFPPYSVGEVGRVGSPGRREIGHGKLAWRALQAVLPA
PTDFPYTIRLVSEITESNGSSSMATVCGGSLSMMDAGVPLKAPVAGVAMGLVLEDDGAFA
VLTDILGDEDHLGDMDFKVAGTEHGITSLQMDIKVAGITPAIMEKALAQAKDGRMHILGE
MAKALTEAGDFSAYAPRIETMTIPTDKIREVIGSGGKVIREIVEVSGAKVDINDDGVIKI
ASADGDAIKKAYDMIYSIVAEPEEGKIYKGTVVKIVDFGAFVNFFGKRDGLVHVSQIENR
RLNHPSDVLKEGQEVWVKLLGFDDRGKVRLSMKSIDQATGEEAPKEKEAEADE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacgtgacgaccaaatcgatgcagtggggggaagagaccctcacgctggagacg
ggcaaggttgcccgtcaggccgacgggtccgtgatcgccaccctgggcgaaacgacggtc
atggcaaacgtgaccttcgccaaggaacagaaggaagggcagggtttcttcccgctcacc
gtccactaccaggaaaaatactatgctgcgggcaaggtgcccggcggcttcttcaagcgc
gaggcgcggccgtccgaaaaagagacgctgaccgcccgcctgatcgaccgtccgatccgt
ccgcttttcgtgcccggcttcaagaacgaagttctggtgatgtgcaccgtgctgtcccac
gatctggtcaatgacccggacatcgtggcgatgatcgcggcctccgccgccctgaccatt
tcgggcgtgcccttcatgggcccgatcgcgggctgccgcgtcggcttcgtggacggcgaa
tatgtgctgaaccccgatgtcgacgacatgcagggcctgcgcaccaatcccgatcagcgg
ctcgacctcgtggtcgccgggacccgcgacgcggtgatgatggtcgaatccgaagcctac
gagctgaccgaggccgagatgctgggcgcggtgaccttcgcccatgacaacatcaaaccg
gtctgcgacctgatcatcagcctggccgaagcggcggcgaaggaacccttcgacttcacg
ccgcccgactattcggcgctgtacgaagcggtgaaggccgtcggcgaagagaagatgcgc
gccgcctatgccatcaccgacaagcaggcccgcgtcgccgcggtgtctgccgccaaggac
gagatcaaggcctcgctcagcgaagagcaactggaggacacgaatctcggttcggcgatg
aagaagctggaatcgaccgtgctgcgctccgacgtggtcaagcatggccgccggatcgac
ggccgcgccctgacccaggtccggccgatcgaatgcgaagtgggcctgctgccccggacg
catggctcggcgctgttcacccgcggcgagacccagggcctgatcgtcaccacgctgggc
accggcgatgacgaacagatcatcgacgcgctgcacgggaacttccgctcgaacttcctg
ctgcattacaacttcccgccctattcggtcggtgaagtgggccgcgtgggcagccccggt
cgccgcgagatcggtcatggcaagctggcctggcgcgcgctgcaggcggttctgcccgcg
cccaccgacttcccctacaccatccgtctggtctccgagatcaccgaatcgaacgggtcc
tcctcgatggccaccgtctgcggcggctcgctgtcgatgatggatgcgggcgttccgctg
aaggctccggtggccggtgtggccatggggctggtgctggaagacgatggcgcgttcgcg
gtcctgaccgacatcctcggcgacgaggaccatctcggcgacatggacttcaaggtcgcg
ggcaccgagcatggcatcacctcgctgcagatggacatcaaggtggcgggcatcacgcct
gcgatcatggagaaagccctggcccaggccaaggacggccggatgcacatcctcggcgag
atggccaaggcgctgaccgaagccggcgatttctcggcctatgcgccgcggatcgagacg
atgaccattcccaccgacaagatccgtgaagtgatcggctcgggcggcaaggtcatccgc
gagatcgtcgaggtctcgggcgccaaggtcgacatcaacgacgatggcgtgatcaagatc
gcgtcggccgatggcgatgcgatcaagaaggcctatgacatgatctactcgatcgtggcc
gagccggaagaaggcaagatctacaagggcaccgtcgtcaagatcgtcgatttcggcgcc
ttcgtgaacttcttcggcaagcgcgacggtctggtccatgtcagccagatcgagaaccgc
cgcctgaaccatccttccgacgtgctgaaggaaggtcaggaagtctgggtcaagcttctg
ggcttcgacgatcgcggcaaggtgcgcctgtcgatgaaatccatcgaccaggccaccggc
gaggaagcccccaaggaaaaggaagctgaagccgacgaataa
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