Rhodovulum sulfidophilum: NHU_04044
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Entry
NHU_04044 CDS
T04143
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHU_04044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsu03021
]
NHU_04044
03019 Messenger RNA biogenesis [BR:
rsu03019
]
NHU_04044
Transcription machinery [BR:
rsu03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NHU_04044
Messenger RNA biogenesis [BR:
rsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NHU_04044
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
OB_RNB
AAA
NACHT
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BAQ71167
UniProt:
A0A0D6B7U9
LinkDB
All DBs
Position
complement(4167444..4168715)
Genome browser
AA seq
423 aa
AA seq
DB search
MTQECLNLADLKAQSPKALLSMAEELEIENASAMRKGEMMFSILKERAEDGWEISGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRLHALRTGDTVEGVMQAPRENERYFAITK
VTKINFQDPEQARHKINFDNLTPLYPDERLKMEIEDPTIRDRSARIIDLVSPIGKGQRAL
IVAPPRTGKTVILQNIANSIETNHPDTYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ATRHVAVAEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRVF
PAMDILKSGTRKEELLVDKSDLQKTFVLRRILNPMGTTDAIEFLISKLKQTKTNSEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacccaagaatgcctgaacctcgccgatctcaaggcccagagccccaaggccctgctt
tccatggcggaagagctcgagatcgagaacgcgtcggcgatgcgcaagggcgagatgatg
ttctcgatcctcaaggagcgcgccgaggatggctgggaaatctcgggcgacggcgttctt
gaggttctgcaggacggattcggcttcctgcgctcgcccgaggccaactatctgcccggt
ccggatgacatctacgtatcgcccgacatgatccgcctgcatgcgctgcgcaccggcgac
acggtcgagggcgtgatgcaggccccgcgcgagaacgagcgctacttcgcgatcaccaag
gtcacgaagatcaacttccaggaccccgagcaggcccggcacaagatcaactttgacaac
ctgacgccgctctatcccgacgagcggctgaagatggagatcgaggatccgacgatccgc
gaccgttcggcccggatcatcgatctggtttcgccgatcgggaaggggcagcgcgcgctg
atcgtcgccccaccgcggaccgggaaaacggtgatcttgcagaacatcgccaattccatc
gagaccaatcacccggacacctatctgatcgtcctgctgatcgacgaacgtcccgaggaa
gtcaccgacatgcagcgctcggtgaagggcgaggtgatttcctcgaccttcgacgaaccg
gcgacgcgtcacgtcgcggtggccgagatggtcatcgagaaggccaagcgtttggtcgag
cataaacgagatgttgtcatcttgctcgattcgatcaccagacttggccgtgcctacaac
actgtggtgccgtcctccggcaaggtgctgaccggcggcgtcgatgccaatgccctgcaa
cggccgaaacggttcttcggtgccgcgcggaatatcgaggagggcgggtcgctgaccatc
atcgcgactgcgctgatcgataccggctcgcggatggacgaggtgattttcgaggaattc
aagggcaccggcaactccgagatcgtgctcgaccgcaaggtcgccgacaagcgcgtcttc
ccggctatggacatcctcaaatcgggcacccggaaagaggaacttctggtcgacaagtcg
gacctgcagaagaccttcgttctgcgccggatcctgaacccgatggggaccacagacgcc
atcgagttcctgatctcgaagctcaagcagaccaagacgaattccgaattcttcgattcg
atgaacacctga
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