Rhodovulum sulfidophilum: NHU_04272
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Entry
NHU_04272 CDS
T04143
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHU_04272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsu03019
]
NHU_04272
03009 Ribosome biogenesis [BR:
rsu03009
]
NHU_04272
Enzymes [BR:
rsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NHU_04272
Messenger RNA biogenesis [BR:
rsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHU_04272
Ribosome biogenesis [BR:
rsu03009
]
Prokaryotic type
rRNA helicases
NHU_04272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
BAQ71385
UniProt:
A0A0D6B992
LinkDB
All DBs
Position
4367258..4369627
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AA seq
789 aa
AA seq
DB search
MIPSLSEALAERGFDTLTDVQKAVTAPELAGADLLVSAQTGSGKTVGFGLAIAPTLMGEE
NRMGPPAAPLALVVAPTRELALQVQRELVWLYARTGAKVVSCIGGMDARDERRALDRGAH
IVVGTPGRLRDHITRGALDLSDIRAVVLDEADEMLDLGFREDLEFMLGAAPAGRRTLLFS
ATVPPAIAELAKAYQRDAVRVTTLSRGSQHADIAYKAVQVTAADAEHAIINLLRYHDAPT
AIVFANTRAAVSRLAARFANRGLSAVSLSGELSQDERSHALQAMRDGRARVCVATDVAAR
GIDLPNLDLVIHADLPSNTEALLHRSGRTGRAGRKGISALIVPDKLAKKAGRLLKWAKIE
AEWILAPTPEEILALDETRLLADPIWEAAPSEAEAAFAARLLAERSPELVAAACLRLYRA
GLSAPEELNAPAAPGARPERPPFGPSVWFELSVGRDRRAEPRWLLPLVCRAGNLERSQIG
RIQLRAETSLVEIAEAAVPGFVAGIGPDGLLEEDITARRFDGPVEDTRGSRPKSDRPKAD
RSKSDRPRSERSRPDARPDRAPRPPRPAPAEAATGASTGTAAPSGRPDAPPPRGDAAEAP
RPKPEFEARPTPRPTPGPERREVLSAEAEAPKPRAPRREADAAPVERPRKPRPDAERSGP
RSEAGAPRPKEGRKDGWKDARKDDRKDGRKDDRKDGRKDGWKDGPARGPKTGPKTGPKGG
ARDWPKDKRPAGNDAAPAERRRADAADTSKRFERPGAPKGKGAKPTGGGKRGAPKLGRSS
GNAPPRRPR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgatcccgtctctctccgaagccctcgccgaacgcgggttcgacacgctgaccgacgtg
cagaaagccgtcaccgcccccgagcttgccggggccgacctgctggtctcggcccagacc
gggtcgggcaagacggtgggcttcgggcttgccatcgcgccgacgctgatgggcgaggag
aaccggatgggtccgcccgccgcgccgctggcgctggtggttgcgccgacccgcgaactg
gcgctgcaggtccagcgcgaactggtctggctgtatgcccggacgggggcgaaggtggtg
tcctgcatcggcggcatggatgcccgcgacgaacgccgcgcgcttgaccgcggcgcccat
atcgtcgtcggcacaccggggcggctgcgcgaccatatcacccgcggcgcgctcgatctg
tccgacatccgcgcggtggtgctggacgaggccgacgagatgctcgatctcggcttccgc
gaggatctggaattcatgctgggcgcggccccggccgggcggcggaccttgctgttctcg
gcgacggtgccgcccgcgattgccgaactcgccaaggcgtatcaacgcgacgcggtgcgg
gtgacgacgctgtcgcgcggcagccagcatgccgatatcgcctacaaggcggtgcaggtg
acggcggccgatgccgaacatgccatcatcaacctgttgcgctaccacgatgcgcccacc
gccatcgtctttgccaatacccgggccgcggtcagccgtctggcggcgcgcttcgccaac
cggggcctgtcggccgtgagcctttcgggcgagctcagccaggacgagcgcagccatgcg
ctgcaggcgatgcgcgacggccgggcgcgggtctgcgtggcgaccgacgtggccgcgcgc
ggcatcgacctgcccaatctcgacttggtgatccatgccgatctgcccagcaataccgag
gcgctgctgcaccgctcgggccgtaccggccgggccgggcgcaaggggatctcggcgctg
atcgtgcccgacaagctggccaagaaggccgggcggctgctgaaatgggccaagatcgag
gccgaatggatcctggcgccgacgcccgaggaaattcttgcgctcgacgaaacccggctt
ctggccgatccgatctgggaggccgcgcccagcgaggccgaggccgcctttgccgcccgg
ctgcttgccgagcgcagccccgagctggtcgcggccgcctgcctgaggctctaccgcgcc
ggtctttctgcccccgaggaactcaacgcgcctgccgcgcccggcgcccggcccgagcgc
ccgcccttcgggccctcggtctggttcgagctgtcggtcgggcgcgaccgccgggccgag
ccgcgctggctgttgccgctggtctgccgggccggcaatctcgaacgctcgcagatcggc
cggatccagctgcgcgccgagacctcgctggtcgagatcgccgaggccgcggtgccgggc
ttcgtcgccgggatcggcccggacgggctgctcgaggaagacatcaccgccagacgtttc
gacggcccggtcgaggatacccgcggttcgcgcccgaaatccgaccgcccgaaagctgat
cggtcgaaatccgatcgcccgcgatccgagcggtcccggccggacgcgcgccccgaccgc
gcaccccgaccgccgcgcccggcacccgccgaggctgccaccggggccagcacagggacg
gctgcgccttcgggcaggcctgacgcgccgccgccccgcggcgatgccgcagaggcgccc
cgtccgaaacccgaattcgaggcccggccgacgccgcgcccgacgcccggcccggagcgg
cgcgaggtcctttccgcagaggcggaggcgccgaagcccagggcgccccggcgtgaggcc
gatgccgcgccggtcgaacggccgcgcaagccgcgccccgacgccgaacggtccggtccc
cgcagcgaggccggcgccccgcgcccgaaagagggccgcaaggacggctggaaagatgcg
cgcaaggacgaccgcaaagacgggcgcaaggatgaccgtaaggacgggcggaaagacggc
tggaaggacgggcccgcgcgtggtcccaaaactggcccgaaaaccggcccgaagggtggg
gccagggactggccgaaggacaagcgccccgcagggaacgatgccgcccccgccgagcgg
cgtcgggcggatgcggccgacacctcgaaacgcttcgaacgtcccggcgcgccgaaaggc
aagggcgccaagccaaccggcgggggcaagcgcggcgctccgaagttaggtcggagcagc
ggcaacgcgccgccccggcgtccgcgctga
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