Rhodovulum sulfidophilum: NHU_04305
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Entry
NHU_04305 CDS
T04143
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NHU_04305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsu03019
]
NHU_04305
03400 DNA repair and recombination proteins [BR:
rsu03400
]
NHU_04305
Enzymes [BR:
rsu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NHU_04305
Messenger RNA biogenesis [BR:
rsu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NHU_04305
DNA repair and recombination proteins [BR:
rsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NHU_04305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
SAM_GIDA_C
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
BAQ71418
UniProt:
A0A0D6B8J7
LinkDB
All DBs
Position
complement(4406190..4408232)
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AA seq
680 aa
AA seq
DB search
MDRPHALLQSIFGFDAFRPGQQDIVEAVASGCNTLAIMPTGGGKSLCFQLPALLRDGVTV
VISPLIALMRDQVRGLTEAGVPAGALTSGNTDEETRAVFEALEAGRLKLLYMAPERLAAG
GTAAMLRRIGVGLIAVDEAHCVSQWGHDFRPDYLRIGELRRALNVPLAAFTATADAETRA
EIVTRLFDGEAPETFLRGFDRPNIRLAFSPKDQPRRQILAYAAARKGQSGIVYCGTRAKT
ESLARALEAEGHSACSYHGGMEAQDRRAVEARFQTEDGLIVVATVAFGMGIDKPDIRWVA
HADLPKSIEAYYQEIGRAGRDGAPADTLTLYGPEDIRLRRSQIDEGAAPPERRAADHARL
NALLGLAEAMDCRRQTLLGYFGEEAAPCGHCDLCETPPERFDATEAVRKALSAMLRTGEY
FGTGHLIDILTGADTAKIRERGHDKLPTYGVGREFDKRGWQAVFRQMMGRDLVRPDPERH
GALRMMEPARPILKGEATIELRRDTIAAAAAARPAVRMLVSEEDAPLLSALKAKRRALAE
AAGVPAYIIFTDRTLIEMAETRPETLDAMARISGVGATKLERHGAEFLAVITGSGTDLPH
PARRKLAGGTAATLYDRLMETQSRLARGADGCEKPLSCTASQVAKLAEIRPADMGTLTRL
LGERRADRFGAAFLDVLAEG
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcccccacgccctcttgcagtcgatcttcggcttcgacgccttccgtcccggc
cagcaggacatcgtcgaggcggtggcctcgggctgcaacacgcttgcgatcatgcccacc
gggggcggcaagtcgctgtgcttccagcttccggcgctgctgcgcgatggcgtgaccgtg
gtgatctcgcccctgatcgcgctgatgcgcgaccaggtgcgcgggctgaccgaggccggg
gtaccggcgggcgcgttgacctcgggcaataccgacgaggaaacccgcgccgtgttcgag
gcgctcgaggccgggcggctgaaactgctttacatggcgcccgagcggctggccgcgggc
ggcaccgcggccatgctgcgccggatcggggtcgggctgatcgcggtcgacgaggcccat
tgcgtcagccagtggggccatgatttccgccccgactacctgcggatcggcgagctcagg
cgggcgctgaacgtgcctctggcggccttcaccgccaccgccgatgccgagacccgggcc
gagatcgtcacccggctgttcgacggcgaggcgcccgaaaccttcctgaggggcttcgac
cggccgaatatccggctggccttcagccccaaggaccagccccgccgccagatcctggcc
tatgccgccgcccgcaagggccagtcgggcatcgtctattgcggcacccgcgccaagacc
gaaagcctcgccagggcgctcgaggccgagggccacagcgcctgttcctatcatggcggg
atggaggcccaggaccgccgcgcggtcgaggcccggttccagaccgaggacgggctgatc
gtggtcgcgaccgtcgccttcgggatgggcatcgacaagcccgatatccgctgggtcgcc
catgccgacctgccgaaatcgatcgaggcctattaccaggagatcggccgcgcgggccgc
gacggggcgcccgccgacacgctgacgctttacggccccgaggatattcgcctgcgccgc
agccagatcgatgaaggcgccgcgccgccggaacgccgcgccgccgatcatgcccggctg
aacgcgctgctggggctggccgaggcgatggactgccgccgccagacgctgctgggctat
ttcggcgaagaggccgcgccctgcgggcattgcgatctctgcgaaaccccgcccgagcgg
ttcgacgccaccgaggcggtgcgcaaggcgctgtcggcgatgctgcggacgggcgaatat
ttcggcaccggccatctgatcgacattctcaccggggccgataccgccaagatccgcgag
cgcggccatgacaagctgccgacctacggcgtcgggcgcgaattcgacaagcgcggctgg
caggcggtgttccgccagatgatgggccgcgacctggtccgccccgatcccgaacgccac
ggcgcgctccggatgatggagcccgcgcgcccgatcctgaagggcgaggcgacgatcgag
ctgcgccgcgacaccatcgccgcggccgccgccgcccggcccgccgtcaggatgctggtc
agcgaggaggacgcgccgttgctgtcggcgctgaaggccaagcgccgggcgctggccgag
gccgcaggcgtgcccgcctatatcatcttcaccgaccgcaccctgatcgagatggccgag
acccgccccgagacccttgatgccatggcgcggatctcgggcgtcggcgccaccaagctg
gaacgccacggcgccgagttcctggcggtcatcaccggctcgggtaccgatctgccccac
cccgcccggcgcaagttggcggggggcaccgccgccacgctttacgaccggctgatggaa
acccagtcgcggctggcccggggcgcggatggctgcgaaaagccgctgagctgcaccgcc
tcgcaggtcgccaagctggccgagatccggcccgcggacatgggcacgctgacccggctt
ctgggcgagcgcagggccgaccgcttcggcgccgccttcctcgacgtgctggccgagggc
tga
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