Ruania suaedae: LQF12_06195
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Entry
LQF12_06195 CDS
T08275
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rsua
Ruania suaedae
Pathway
rsua03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LQF12_06195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_06195
Enzymes [BR:
rsua01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LQF12_06195
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LQF12_06195
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LQF12_06195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zn_ribbon_RRN7
SH3_16
Motif
Other DBs
NCBI-ProteinID:
UFU04169
LinkDB
All DBs
Position
complement(1348992..1349876)
Genome browser
AA seq
294 aa
AA seq
DB search
MPEMPEVAALAAFLTERLVGRTVAAVHVPGIQALKTFDPPPQALVGRAVDRVDRHGKWLE
VRTGADPDGDQAGLSLVVHLARAGWLRWQERAPATVPRSPKSPIAVRVVLDDGSAFDLTE
AGTRKRLAVHVVREAAQIPMVASLGPDPLGEAFTPAVLSELLGRRRAQLKGVLRDQSIVA
GIGNAYSDEILHAARLSPFAPSTSLPAEEIGHLHATIRTVLAEALAAAAGTPAAQLKDAK
RAGMRVHGRAGQPCPVCGDVVREVSFADSSLQYCASCQTGGKILADRRMSRLLR
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagatgcccgaggtggccgcactggccgcctttctcaccgagcggctggtcggc
cgcaccgtggcggccgtccacgtgcccgggatccaggccctcaagacgttcgacccgccc
ccgcaggcgctggtcggacgagccgtggaccgggtggaccggcacggcaagtggctggag
gtccgcaccggtgccgaccccgacggcgatcaggcggggctgtccctggtcgtccacctc
gcccgcgccgggtggctgcggtggcaggagagggctcccgccacggtgccgcgatcgccc
aagtcgccgatcgcggtccgggtggtgctcgacgacggctccgccttcgacctcaccgag
gccggcacccgcaagcggctcgcggtgcacgtggtgcgcgaggccgcgcagatcccgatg
gtcgcgagcctcgggccggacccgctcggcgaggccttcacacccgcggtcctttccgag
ctgctcggcagacgacgtgcccagctcaagggcgtgctgcgggaccagagcatcgtggcc
gggatcgggaacgcctacagcgacgagatcctgcacgccgcgaggctgagcccgttcgca
cccagcacctcgttgccggccgaggagatcgggcacctgcacgcgaccatccgcaccgtg
ctcgcggaggctctcgccgccgcggcgggcacgccggcggcccagctcaaggatgccaag
cgcgccgggatgcgcgtgcacggccgggccggtcagccctgcccggtctgcggggacgtc
gtccgcgaggtctccttcgcggactcgtcgttgcagtactgcgcgtcctgccagaccggg
gggaagatcctcgccgaccggcggatgtcgcgcctgttgcgctga
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