Ruania suaedae: LQF12_06600
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Entry
LQF12_06600 CDS
T08275
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsua
Ruania suaedae
Pathway
rsua03030
DNA replication
rsua03430
Mismatch repair
rsua03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQF12_06600 (dnaE)
03430 Mismatch repair
LQF12_06600 (dnaE)
03440 Homologous recombination
LQF12_06600 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsua03032
]
LQF12_06600 (dnaE)
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_06600 (dnaE)
Enzymes [BR:
rsua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LQF12_06600 (dnaE)
DNA replication proteins [BR:
rsua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LQF12_06600 (dnaE)
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LQF12_06600 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HHH_3
Motif
Other DBs
NCBI-ProteinID:
UFU04245
LinkDB
All DBs
Position
1437467..1441021
Genome browser
AA seq
1184 aa
AA seq
DB search
MSADFVHLHVHTEYSMLDGAARLDDLFTEAQRLGQSAVAMTDHGYLFGAYDFWSKARKYG
IKPIIGVEAYVTPGTSRFDKTRVRWGEADQAGDDVSARGAYTHMTILAKDTPGMHNLFRM
SSLASLEGQLGKWPRMDRELLETYSQGLIATTGCPSGEVQVRLRLGQYEEAVRAAGELQD
IFGKENYYVELMDHGLDIERRVTKDLLRLAKEIGAPLLATNDLHYTSREDAHAHEALLCV
QSGSTLEEPTYDQGGKRFAFGGSGYYLKSAEEMRELFAEFPEACDNTLRVAEQCEVAFTE
EVGRYMPHYPVPEGEDEVSTFVKAVETGLQERYGGVVPEASRKQAEYEIGVITGKGYAGY
YLVVADFINWAKENGIRVGPGRGSGAGSIAAYAMSITELDPLEHGLIFERFLNPERESMP
DFDIDFDERRRGEVIKYVSDKYGEDKVTYIVTYGTIKAKQALKDSSRVLGYPFAMGEKLT
KAMPAAVMGKDVSLAGMFDPDDKRYAEADEFRQVVQSDPDAQRVLETARGLENLKRQWGV
HAAGVVIASEPLLDIIPIMRREQDGAVITQIDFPAGEDLGLVKMDFLGLRNLTILDDALD
NIVINGKEPVRVEDLPLDDRATYELLGRGETLGLFQLDGGGMRSLLRMMKPDNFEDISAV
GALYRPGPMGANSHTNYALRKNGQQPITPIHPELAEPLESILGTTYGLIVYQEQVMEIAQ
KLAGYSLGQADLLRRAMGKKKKSVLDAEYSNFEAGMTANGYSANAVKTLWEILLPFSDYA
FNKAHSAAYGVVSYWTAYLKAHYACEYMAALLTSTRDDKDKSALYLGECRRMRITVLPPD
VNESAAQFTPVGTDIRFGLAAVRNVGQNVVAAIARAREEKGEFTSFTDFLDKVPAVVCNK
RTIESLIKAGAFDSLGHTRRSLLMIHEQAVDAVIGVKRKEAEGQFDLFAGLGGDGDDGAG
ASGFAVEVPELPEWDKKQKLAFEREMLGLYVSDHPLSGIEHVLTQAADVSLATLTTDETR
PDGSTVTIAGLITSLQRKMSKQGNPWAAVTIEDMEGSVEVMFFGETYLAYSTVLAQDQVV
VVKGRIRRRDETLSLQAMEVTLPDVTVGESAPVMVRIPEARCSEPVLLQLRDVLSTHPGV
SEVHVRLTAPGRATVMRLEDALRVERTPALFGDLKALLGPNCLT
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccgacttcgtccacctgcacgtgcacaccgagtactcgatgctggacggggcg
gcccggctggacgatctgttcaccgaggcgcagcggctggggcagagtgcggtggcgatg
accgaccacggctatctcttcggtgcctacgacttctggtccaaggcccgcaagtacggg
atcaagccgatcatcggcgtcgaggcctatgtcacgcccggcacgagccggttcgacaag
acgcgcgtgcggtggggcgaggccgaccaggccggggacgacgtctccgcccgcggcgcc
tacacgcacatgacgatcctcgccaaggacacccccgggatgcacaacctgttccggatg
agctcgctggcctcgctcgaggggcagctgggcaagtggccacggatggaccgggagctg
ctggagacctacagccaggggctgatcgccaccaccggatgcccctccggcgaggtgcag
gtccggctccggctgggccagtacgaggaggcggtgcgggccgccggtgagctgcaggac
atcttcggcaaggagaactactacgtcgagctgatggatcacggcctcgacatcgaacgc
cgcgtcaccaaggacctgctgcggctggccaaggagatcggcgccccgctgctggccacc
aacgatctgcactacacctcccgggaggacgcccatgcccacgaggcgctgctgtgcgtg
cagtccggctccaccctcgaggagcccacctacgaccagggcggcaagcggttcgcgttc
ggcggcagcggctactacctgaagtcggccgaggagatgcgcgagctgttcgccgagttc
cccgaggcctgcgacaacaccctgcgggtggccgagcagtgcgaggtggccttcaccgag
gaggtgggccgctacatgccccactacccggtgcccgagggggaggacgaggtctccacc
ttcgtcaaggcggtcgagaccggcctgcaggagcgttacggcggtgtggtgccggaggcc
tcgcgcaagcaggccgagtacgagatcggggtcatcaccgggaaggggtacgccgggtac
tacctcgtggtcgccgacttcatcaactgggccaaggagaacggcatccgggtgggcccg
ggccgcgggtccggggcgggctcgatcgccgcgtacgcgatgagcatcaccgagctcgac
ccgctcgagcacgggttgatcttcgagcgcttcctcaaccccgagcgtgagtcgatgccc
gacttcgacatcgacttcgacgagcgccgtcgtggtgaggtgatcaagtacgtcagtgac
aagtacggcgaggacaaggtcacctacatcgtgacctacggcaccatcaaggccaagcag
gcgctgaaggactcctcgcgcgtgctcggctaccccttcgccatgggggagaagctgacc
aaggccatgccggccgccgtcatgggcaaggacgtctccctggccgggatgttcgacccc
gacgacaagcggtacgccgaggcggacgagttccgtcaggtcgtccagtccgatccggac
gcccagcgggtgctggagaccgcccgcgggctggaaaacctcaagcggcaatggggggtg
cacgccgccggtgtggtcatcgccagcgagccgctgctggacatcatccccatcatgcgc
cgcgagcaggacggcgccgtgatcacccagatcgacttccccgcgggggaggacctgggc
ctggtcaagatggacttcctcggcctgcgcaacctcaccatcctcgacgacgcgctcgac
aacatcgtcatcaacggcaaggagccggtgcgggtggaggacctgccgctggatgaccgc
gccacctatgagctcctgggccgcggggagacgctgggactgttccagctcgacggcggt
ggcatgcgctcgctgctgcggatgatgaagccggacaacttcgaggacatctccgccgtc
ggtgcgctgtaccggccgggaccgatgggggcgaactcccacacgaactacgcgctgcgc
aagaacggccagcagccgatcaccccgatccatcccgagctcgccgaaccgctcgagagc
atcctcggcaccacctacggcctgatcgtctatcaggagcaggtgatggagatcgcgcag
aagttggccggctactccctgggccaggccgacctgctccggcgcgcgatgggcaagaag
aagaagtcggtgctcgatgccgagtactccaacttcgaggccgggatgaccgccaacggt
tactccgcgaacgccgtcaagacgctctgggagatcctgctcccgttctccgactacgcc
ttcaacaaggcccactcggccgcctacggagtggtctcctactggaccgcctacctcaag
gcccattacgcctgcgagtacatggcggcgctgctgacctccacccgggacgacaaggac
aagtcggccctgtatctgggcgagtgccgccggatgcggatcacggtcctgccgcccgac
gtcaacgagtccgccgcgcagttcaccccggtcgggaccgacatccggttcgggttggcg
gcggtgcgcaacgtcgggcagaacgtggtggccgcgatcgccagggcccgggaggagaag
ggggagtttacctccttcaccgacttcctcgacaaggtgccggccgtggtgtgcaacaag
cgcaccatcgagtccctcatcaaggccggcgccttcgactctctcggccacacccgccgg
tcgctgctgatgatccacgagcaggcggtggacgccgtcatcggggtcaagcgcaaggag
gccgagggtcagttcgacctgttcgccggactgggcggcgacggcgacgacggtgcgggt
gcctccggcttcgccgtcgaggtgcccgagctgcccgagtgggacaagaagcagaagctc
gccttcgagcgcgagatgctcggactgtacgtctccgaccacccgctctcgggcatcgag
cacgtgctcacccaggcggccgacgtctccctggccacgctcaccaccgacgagacccgg
cccgacgggtccacggtcaccatcgccgggctcatcacctccttgcagcggaagatgtcc
aagcagggcaacccgtgggccgcggtgacgatcgaggacatggagggctcggtcgaggtg
atgttcttcggcgagacctacctggcctactccacggtgctcgcccaggaccaggtcgtc
gtcgtcaagggccgcatccggcgccgggacgagaccctctcgctgcaggcgatggaggtc
acgctgcccgatgtcaccgtgggcgagtcggccccggtgatggtgcgtatccccgaggcc
cggtgcagcgagccggtgctgctgcagctgcgggacgtgctctccacccatcccggggtg
agcgaggtgcatgtgcggctgacggcaccggggcgggcgaccgtgatgcggctcgaggat
gccctgcgggtggagcgcaccccggcgctgttcggtgacctcaaggccctgctgggaccg
aactgcctgacctga
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