Ruania suaedae: LQF12_10585
Help
Entry
LQF12_10585 CDS
T08275
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsua
Ruania suaedae
Pathway
rsua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LQF12_10585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsua03019
]
LQF12_10585
03009 Ribosome biogenesis [BR:
rsua03009
]
LQF12_10585
Enzymes [BR:
rsua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LQF12_10585
Messenger RNA biogenesis [BR:
rsua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LQF12_10585
Ribosome biogenesis [BR:
rsua03009
]
Prokaryotic type
rRNA processing factors
LQF12_10585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UFU04656
LinkDB
All DBs
Position
complement(2307674..2310751)
Genome browser
AA seq
1025 aa
AA seq
DB search
MTPEVAAEVEATTPDVTPDAAPEASEEAAPAEEPTKPKRRRKAANAAPAVAEEPVQDEEQ
ADDESGSGADEAGTDTQAGPAPEAEPEQPPARQRRSGGRRATSSGGTPEPALDVFAAFGV
AAGSADEAEQTDEADETGRPAIDLDLPAREDGAVRAPSARGGRRRRSGDSKKTDDAGSPA
TTEQAAQAGVTAEAEQADQADGDEVAGTAEDDSPRLPATALLFQAPDASRARRRRRAASD
GGAPRAGVAEETGSGPSEDQQPAADETETSPRDDDSSTDSSSDTDEQSGGGNKRRRRRGG
RGRRKSGGGQGGQDDSGEDSGESTDAEVTEGSASEGSEPSKGSKKRSGRGRGSSGAKDEA
EDEQTPEDDSADSDEDGSGDQDGSGSSRRRRRRRSRGSRGGNGEETSAKDEVTALKGSTR
LEAKRQRRREGRDSGRRRSIITEAEFLARRESVDRSMVVRERDGRTQIAVLEDDVLVEHY
VARKTQSSMVGNVYLGRVQNVLPSMEAAFVDLGKGRNAVLYAGEVNWDAAGLEGQPRRIE
QALTSGDSVLVQVTKDPIGHKGARLTAQVTLAGRYLVLVPSGSMTGISRKLPDTERQRLK
KLLKEIVPEGQGVIVRTAAEGASEDALRHDVERLTKQWDDIQAKVGRKSVSAPVLLKGEP
ELATRVVRDVFNEDFKSLVVAGDEAWKTIAEYVGSVAPDLRERLHHWTSTKDVFAEHRID
EQLAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGTLEETVTRNNLEAAEEIV
RQLRLRDIGGIIVVDFIDMVLEANRDLVMRRLVECLGRDRTRHQVAEVTSLGLVQMTRKR
VGQGLVEAFSETCEHCNGRGFLVHSDPVESKESSKSNGNGNGNGNGNGSAEGGSKSSRRR
KSRPEKPAPEHEVDPEKQAQVRATLATIAAAAAHAHESDHLHAEADTTSDAGSGTSESPA
ESGTQTEGAEVAAEIAAMAVHAAEAEAVQTEATEAVQQEAPQAAAQEPEGTHEEQTEQAD
TPTTG
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggaggtcgccgccgaggtcgaggcgaccacaccggacgtgacgccggacgcg
gcgccggaggcgagcgaagaggcagcgcccgcggaggagcccaccaagcccaagcgccgg
cgcaaggccgcgaatgccgctcccgctgtggccgaggagcccgtgcaggacgaggagcag
gccgatgacgagtccggctccggtgcggacgaggcggggaccgacacccaggccggaccc
gcccccgaggccgagcccgagcagcctccggcgcgccagcgccgcagcggcggccgccgc
gccacctcgtccggggggacgcccgagccggcgctggacgtcttcgccgcgttcggcgtg
gccgccgggtccgcggacgaggccgagcagaccgacgaggccgacgagaccggccgcccg
gcgatcgacctcgaccttcccgcgcgcgaggacggtgccgtccgggcgccgagcgctcgc
ggcggacgtcggcggcgctccggtgactcgaagaagaccgatgacgccgggagtcccgcg
accaccgagcaggcagcccaggccggcgtgaccgccgaggcggagcaggcggaccaggcc
gatggcgacgaggtagcaggcacggctgaggacgactcaccgcggctgcccgccacggcg
ttgctcttccaggcccccgacgcctcccgcgcccgccgccgccgcagggcggcaagtgac
ggtggcgccccccgcgccggcgtggccgaggagaccgggtccgggccgagcgaggaccag
cagcccgccgcggacgagaccgagacctcaccgcgcgacgacgacagttccaccgacagt
tcctccgacaccgacgagcagtccggcggcggcaataagcgccgtcgtcgccgtggcggg
cgcggccggcgcaagtccggtggcggtcagggtggtcaggacgattccggcgaggactcc
ggcgagtccaccgacgccgaggtgaccgagggctccgcatcggaaggctccgagccgtcg
aagggctcgaagaagcggtccggccgtggccgagggtcgtccggtgcgaaggacgaggcc
gaggacgagcagacaccggaggacgactccgccgactcggacgaggacggttccggcgat
caggacgggtcgggctcctcgcgccgtcgccgtcgccgtcgtagccgcggctcgcgtggg
ggcaacggcgaggagacctcggccaaggatgaggtgaccgccctcaagggctccacccgc
ctggaggccaagcgccagcgccgccgggagggccgggactccggccgccggcgctcgatc
atcaccgaggccgagttcctcgcccggcgtgagtcggtcgatcgctcgatggtggtgcgc
gagcgcgacggccgcacccagatcgccgtgctcgaggacgacgtgctcgtcgagcactac
gtcgcccgcaagacccagagctcgatggtcggcaacgtctacctcgggcgggtgcagaac
gtgctgccctcgatggaggcggcgttcgtcgacctcggcaaggggcgcaacgccgtcctg
tacgccggtgaggtgaactgggacgcggccgggctcgagggccagccgcgccggatcgag
caggcgctcacctccggtgactcggtcctggtgcaggtgaccaaggacccgatcgggcac
aagggtgcacgcctgaccgctcaggtgaccctcgcgggccgctacctggtgctggtgccc
tcgggttcgatgaccggtatctcccgcaagctgcccgacaccgagcgccagcggctgaag
aagctgctcaaggagatcgtcccggaggggcagggcgtgatcgtgcgcaccgccgccgag
ggagccagcgaggacgcgctgcgtcacgacgtcgagcggctcaccaagcagtgggacgac
atccaggccaaggtcggccgcaagtccgtcagcgccccggtgttgctcaagggtgagccg
gaactggccacccgcgtggtccgggacgtgttcaacgaggacttcaagtcgctggtggtc
gccggcgacgaggcgtggaagaccatcgcggagtacgtcggttcggttgcgccggacctg
cgcgaacgtctgcaccactggacctccaccaaggatgtcttcgccgagcaccgcatcgac
gagcagctcgccaagggcatggaccgcaaggtctggctgccctcgggggggtcgctggtc
atcgaccgcaccgaggccatgacggtcgtggacgtcaacaccggcaagttcaccggctcc
gggggcacgctggaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtg
cgtcagctccggctgcgtgacatcggcggcatcatcgtcgtcgacttcatcgacatggtc
ctcgaggccaaccgggacctggtcatgcgccgcctggtggagtgcctgggccgggaccgc
acccgtcaccaggtcgccgaggtcacctcgctcgggctggtgcagatgacccgcaagcgg
gtgggccagggcctggtggaggccttcagcgagacctgcgagcactgcaacggccgcggc
ttcctcgtgcactccgacccggtggagtcgaaggagagctccaagtccaacggcaacggc
aacgggaacggcaacggcaacgggtccgccgagggcggctcgaagtcatcccgacggcgc
aagagccggcccgagaagcctgcgcccgagcacgaggtcgacccggagaagcaggcccag
gtgcgcgccaccctcgcgacgatcgcggccgctgccgcgcacgcgcacgagtccgatcac
ctgcacgccgaggccgacaccacgagcgacgcgggcagcggcacgagcgagagcccggcc
gagagcggtacgcagaccgagggcgccgaggtggcggcagagatcgctgccatggcagtg
cacgcggcggaggccgaggccgttcagaccgaggcgaccgaggccgtccagcaggaggca
ccgcaggccgccgcgcaggagcccgaaggcacccacgaggagcagacggagcaggcggac
accccgaccaccggctga
DBGET
integrated database retrieval system
