Ruania suaedae: LQF12_13205
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Entry
LQF12_13205 CDS
T08275
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rsua
Ruania suaedae
Pathway
rsua03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LQF12_13205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsua03021
]
LQF12_13205
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_13205
Enzymes [BR:
rsua01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LQF12_13205
Transcription machinery [BR:
rsua03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LQF12_13205
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LQF12_13205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UFU02443
LinkDB
All DBs
Position
complement(2868195..2872085)
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNVFDELRIGLATADEVRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDVDGRHEDLPSLQNEIDLEKDEIAKKRDLTIAKRAERLEAD
LAELEAEGAKADARRKVKDSAEREMAQLRKRADADLDRLEQVWDRFKNLKVSDLEGDELL
YRQLQDRYGNYFEGAMGAGAIQKRLQSFDLKAEAESLRETIRSGKGQRKTRALKRLKVVN
AFLTTTNSPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
SVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAVHLHPLVCGAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLFHLTSEKEGEPIGTG
RSFTTVAEAMMAFDAGSLDLNAHITIRLEGVVSSEGWEAPEGWEPGQPALVSTTLGRVLF
NEALPVDYPYFNEVADKKSISAIVNDLAERYPKAVVAASLDALKDAGYYWATRSGLTIAI
SDVEAPEAKAEIIARYEEKAAKVQGQFDRGLLTDDERRQELVEIWNQATDEVATAMRENF
SASNTVNRMVTSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKSNYREGLSVLEYFIAS
HGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLTLPIMETSTTGEVRRA
DTVETSVYGRTLAGPVAGPDGTVLGEGGQDVGDVLISELLAAGVEQLKVRSVLTCESRVG
TCAKCYGRSLATGLLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPRV
AELFEARTPKGEAPIAEVAGRVSIEDTDRSRRIVVTPDDGSEDFVYQVTKRARLHVHDGD
RVGVGQQLVAGAVDPKKVLRILGPRAVQKHLVDEVQETYRSQGVDIHDKHIEVIVRQMLR
RVTVLDSGESNLLPGELAERGRFEDENRRTVSEGGQPASGRPELMGITKASLATESWLSA
ASFQETTKVLTEAAMSGRSDSLLGLKENVILGKLIPAGTGLPRYRNIRVEPTEAAKAEIY
PSFGYDEIDYGPVSDGGEAIALEELDLGRGFEADFR
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgtatcggtctcgcgaccgcggacgaggtc
cgcgcctggtcgcacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcgggaagtacaagcgcgtccgcttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcacccgttcgaaggtccgccgtgagcggatggggcacatcgagctcgccgccccg
gtgacccacatctggtacttcaagggtgtgccctcccgcctcggctacctgctcgacctg
gccccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacgtgggtggac
gtggacggacgccacgaggatctgccgagcctgcagaacgagatcgacctggagaaggac
gagatcgccaagaagcgcgacctcaccatcgccaagcgggccgagcgcctcgaggcggat
ctggccgagctcgaggccgagggcgccaaggcggacgcccgccgcaaggtgaaggactcc
gctgagcgcgagatggcgcagctgcgcaagcgcgccgacgccgatctcgatcggctcgag
caggtgtgggaccggttcaagaacctcaaggtctccgacctcgagggcgatgagctgctc
taccgccagctccaggaccgctacggcaactacttcgagggcgcgatgggtgccggcgcg
atccagaagcgtctgcagtccttcgacctgaaggccgaggccgagtcgctgcgcgagacc
atccgttccggcaagggccagcgcaagacccgtgcgctgaagcggctcaaggtcgtcaac
gcgttcctgaccaccaccaactccccgcaggggatggtgctggactgcgtcccggtcatc
ccgccggacctgcgacccatggtccagctcgacggtggccggttcgccaccagcgacctc
aacgacctctaccgtcgcgtcatcaaccgcaacaaccgcctcaagcggctgctggacctg
ggtgcgccggagatcatcgtcaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggtcgccgtgggcgtccggtcaccggaccgggcaaccggccgctgaag
tcgatctccgacatgctcaagggcaagcaggggcgtttccgccagaacctgctcggtaag
cgcgtcgactactccggtcgtagcgtcatcgtggtcgggccgcagctgaagctgcaccag
tgcgggctgcccaagcagatggcgctcgagctcttcaagccgttcgtgatgaagcggctc
gtggatctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgcgcgcgc
tcggtggtctgggatgtcctcgaagaggtcatcaccgagcacccggtgttgctcaaccgt
gcccccaccctgcaccgcctgggcatccaggccttcgagccgcagctggtcgagggtaag
gccgtccacctgcacccgctggtgtgtggcgccttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcacgcatcctgatgctg
tcctcgaacaacatcctcaagccctccgacggccgtccggtcaccatgccctcgcaggac
atgatcatcgggctgttccacctgacctccgagaaggagggggagccgatcggtaccgga
cgctcgttcaccaccgtcgccgaggcgatgatggcgttcgacgcgggttcactggacctc
aacgcccacatcaccatccggctcgagggcgtcgtgtcctccgagggctgggaggctccc
gagggttgggagcccgggcagccggcgctggtgagcaccaccctgggccgcgtgctgttc
aacgaggcgctcccggtcgactacccgtacttcaacgaggtggccgacaagaagtcgatc
tccgccatcgtcaacgatctggccgagcgctacccgaaggcggtcgtggccgcgagcctc
gacgccctcaaggatgccggctactactgggccacccggtccgggctgacgatcgccatc
tccgacgtcgaggcgcccgaggccaaggccgagatcatcgcccgctacgaggagaaggcg
gccaaggtccagggccagttcgaccgtggtctgctcaccgacgacgaacgtcgtcaggag
ctggtggagatctggaaccaggccaccgacgaggtggcgaccgcgatgcgggagaacttc
tccgcctcgaacacggtcaaccgcatggtgacctccggagcgcgcggtaactggatgcag
gtccgtcagatcgccggtatgcgcggtctggtcgccaaccccaagggcgagatcatcccg
cgcccgatcaagtccaactaccgcgagggcttgtcggtgctggagtacttcatcgcctcg
cacggtgcgcgtaaggggctggccgacaccgcgctgcggacggccgactccgggtacctg
acgcgtcgtctggtggacgtctcccaggacgtcatcatccgtgaggaggactgcggcacc
gagcgtggcctcaccctgccgatcatggagacgtccacgaccggggaggtccgccgtgcg
gacaccgtcgagaccagcgtctacggacgtaccctcgccgggcccgtggccggacccgac
ggcacggtcctcggcgagggcggtcaggacgtcggcgacgtgctgatctccgagctcctg
gctgccggtgtcgagcagctcaaggtgcgttcggtcctgacctgcgagtcccgggtgggc
acctgcgccaagtgctacggccgctccctggccaccggcctgctggtggacatcggcgag
gctgtcggcatcatcgccgcgcagtcgatcggcgagccgggtacgcagctgacgatgcgg
accttccacaccggtggtgtggccagtgccgaggacatcacccagggtctgccgcgtgtg
gccgagctcttcgaggcccgcacccccaagggtgaggctccgatcgccgaggtcgccggg
cgtgtcagcatcgaggacaccgaccgttcgcgccggatcgtcgtcacccctgacgacggc
agcgaggacttcgtctaccaggtcaccaagcgggcacgtctgcacgtgcacgacggcgac
cgggtgggtgtcggccagcagctggtcgccggtgccgtggacccgaagaaggtgctgcgc
atcctcgggccccgtgcggtgcagaagcacctggtggacgaggtgcaggagacctaccgc
agccagggtgtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgc
cgcgtgaccgtgctggactcgggcgagtcgaacctgctgccgggcgagctcgccgagcgc
ggccggttcgaggacgagaaccgtcggacggtctccgagggcggccagcccgcctcgggc
cgccccgagctcatgggcatcaccaaggcctccctggcgaccgagtcgtggctgtccgcc
gcctcgttccaggagaccaccaaggtgctgaccgaggccgcgatgagtggccgctcggac
tcgctgctgggtctgaaggagaacgtcatcctcggtaagctcatcccggccggtacgggc
ctgccccgctaccgcaacatccgggtggagcccaccgaggcagcgaaggcggagatctac
ccgagcttcggctacgacgagatcgactacggccccgtctccgacggtggcgaggcgatc
gcgctcgaggagctcgacctcggccgtggcttcgaggcggacttccgctga
DBGET
integrated database retrieval system
