Rhizobium sullae: N2599_10460
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Entry
N2599_10460 CDS
T08545
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rsul
Rhizobium sullae
Pathway
rsul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N2599_10460 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsul03019
]
N2599_10460 (rnr)
03016 Transfer RNA biogenesis [BR:
rsul03016
]
N2599_10460 (rnr)
Enzymes [BR:
rsul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
N2599_10460 (rnr)
Messenger RNA biogenesis [BR:
rsul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
N2599_10460 (rnr)
Transfer RNA biogenesis [BR:
rsul03016
]
Prokaryotic type
tRNA degradation factors
N2599_10460 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
UWU16361
LinkDB
All DBs
Position
2050524..2052884
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AA seq
786 aa
AA seq
DB search
MSRIPRERTKTMGKIGRASPDAPAVEPLNIVHGALPSREVVLRFIAEHPQKASKRELARA
FGLKGHSRVELKHMLRDLEQEGMLQKTRKSLIRPGALPPVTVLDITTRDKDGELIGRPAE
WPEDQGVAPAVAIRQTSPAGRQGKGKAPVAGMGDRVVAKIFPAADRGGPAYTARIIKIID
KRRGATMGVFRTAPGGAGRLLPIERRGEEMLIDPDDTGGAKDGDLVEVEIARLGRIGLPR
AKVLSVVGSVASEKALSMIAIHAHGIPHVFPQAVIDEAEAAKPATMSHREDWRDVPLITI
DPADAKDHDDAVYAEPDPSPDNPGGVIITVAIADVSYYVRSNSALDREALKRGNSVYFPD
RVVPMLPERISNDLCSLKERVDRPALAVRMVFSKDGRKAGHTFHRVMMKSAAKLSYSQAQ
AAIDGTPDDKTGTMLEPILKPLWHAYEIIRRGRDKRQPLELDMPERKILLKPDGTVDRVF
VPPRLDAHKLIEEMMIQANVCAAETLEKKRQLLIYRIHDSPTLAKQEILRDFLATLGISL
AKGGNVRANSFNGILAKAENTPHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTS
PIRRYADLIVHRALVGSLGLGEGAITPEEEAALDDIAAEISTFERRAMAAERETVDRLIA
HHLSTRVGEEFKGRVSGVTKSGLFVALPDYGADGFVPISTLGTDYFIYDEAHQALSGEKT
GLGYRLGDDVTVKLAEAIPLAGALRFEMVSEGRNMPTAVRSFHKAGRRDNRQARKMAGTR
PPRGRR
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaggatcccgcgcgaaagaacgaagaccatgggcaaaatcggccgcgcgagcccg
gatgcccccgcggtcgagccgctgaacatcgtgcacggcgccttgccgtcgcgcgaagtc
gtcctgcgcttcatcgccgagcatccgcaaaaggcgtccaaacgcgagctcgccagggca
ttcgggctcaagggccatagtcgcgtcgaactcaagcacatgctgcgggatctcgaacag
gaaggcatgctgcagaagacgcgcaagtctctcatccggccgggcgcgctgccgcctgtg
acggtgctcgacatcacgacgcgcgacaaggacggcgaactgatcggccggccggcggaa
tggccggaggatcagggcgttgcgcccgctgtcgcgatccgacagacgtcgccggccggg
cgtcagggcaaaggcaaggcccctgttgccggcatgggcgaccgcgtggtggcgaagata
tttccggcggccgaccgcggcgggccggcctataccgcgcgcatcatcaagatcatcgac
aagcgccgcggcgcgaccatgggcgtcttccgcacggcacccggcggcgccggacggctg
ctgccgatcgaacggcgcggcgaggaaatgctgatcgatccggatgataccggcggcgcc
aaggatggcgatttggtcgaagtcgagatcgcgcgcctcggacgcatcggcctaccgcgc
gcaaaggtgctgtcggtcgtcggttccgtcgcctcggagaaggcgctctcgatgatcgcg
atccacgcgcacggcattccgcatgtcttcccgcaggcggtgatcgatgaagccgaagcg
gcgaagcccgcgaccatgtcgcatcgcgaagactggcgcgacgtgccgctgatcacgata
gacccggccgatgcgaaggaccacgacgacgcggtctatgctgaaccggacccctccccc
gacaatcccggcggcgtgatcatcaccgtggcgatcgccgacgtatcctactatgtgaga
tccaattcggcactcgaccgcgaagcgctgaagcgcggcaattcggtttatttcccggat
cgtgtcgtgccgatgctgccggagcgcatttccaacgacctctgctcgctgaaggaacgc
gtcgaccgcccggcgcttgccgtgcgcatggtcttctcgaaggatggccggaaggccggg
catacgttccaccgcgtcatgatgaagagcgcggcgaagctctcctacagccaagcgcag
gcggcgatcgacggcacgccggatgacaagaccgggacgatgctggaaccgatcctgaag
ccgctctggcatgcctacgagataataagacgcggccgcgacaagcgccagccgctcgag
ctcgacatgcccgagcgcaagatcctgctgaagccggacggcacagtggaccgcgtcttc
gtgccgccgcggctcgacgcgcacaagctcatcgaagagatgatgatccaggccaatgtc
tgtgcggccgaaacgctcgaaaagaagcgccagttgctgatctatcgcatccacgatagc
ccgacgcttgccaagcaggagatcctgcgcgactttctggcgacgctcggcatctcgctt
gccaagggcggcaatgtgagggcgaacagcttcaacggcatcctggcaaaggccgagaac
acgccgcatcagacgatggtcaacgagatggtgttgcgctcgcagagccaggcgatctac
agcccggaaaacatcggccatttcgggctgaacctgatgaagtatgcgcacttcacctcg
ccgatccggagatatgcggacctgatcgtccaccgcgcgctggtcggctcgcttggtctc
ggcgaaggcgccatcacgccggaggaggaagccgcactcgacgacatcgccgccgaaatc
tccaccttcgagcgccgtgcaatggccgcggagcgtgagacggtcgaccggctgatcgcc
caccatctcagcacgcgggtcggcgaagagttcaaggggcgcgtatcaggcgtcacgaaa
tcgggactatttgtcgccctccctgactatggagccgacggcttcgtacctatatctacg
ctcggtacggactacttcatctacgacgaggcgcatcaggcgctgtcgggtgagaagacc
ggactgggctaccgtctcggagatgatgtcaccgtgaagcttgccgaagcgatcccgctc
gccggcgcgcttcgtttcgagatggtcagcgaaggacgcaacatgccgacggcagtgcgc
tcgttccacaaggcaggccgccgggacaaccggcaggcccgcaagatggccggaacaagg
ccgccaagagggcggcgatag
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