Rhizobium sullae: N2599_23895
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Entry
N2599_23895 CDS
T08545
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rsul
Rhizobium sullae
Pathway
rsul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N2599_23895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsul03400
]
N2599_23895 (ligD)
Enzymes [BR:
rsul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N2599_23895 (ligD)
DNA repair and recombination proteins [BR:
rsul03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N2599_23895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UWU18290
LinkDB
All DBs
Position
pWSM1592_1:667151..669652
Genome browser
AA seq
833 aa
AA seq
DB search
MALETYQAKRNFGATPEPRGAKGRSPGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTRG
PSLNPEDKRLAVHVEDHPLSYGDFEGIIPKGQYGGGTVIVWDRGTWTPLGDAKKAYRKGH
IEFELDGEKLKGRWHLVRMHGQPGEKHENWLLIKGDDTEARHDGKDILKQRPESAKTGRR
IEEVAKNPTDTWNSKPKGDGKAVAAKTKKAGRQIHDWPKGARKAAMPDFVEPTLAKLKAK
PPAGDGWIHEIKFDGYRLQIRIENGEVKMLTRTGLDWTEKFGKDIADAFKALPIQSAIMD
GELVVEQDSGASDFSALQQDLSQRRYDRFVFYTFDLIYLDGHDLRDVPLIERKRLLEKML
PAGNDKLRYSEHFDENGSLVLDHVCRLSLEGVVSKQRDSTYTSGRRGEWIKAKCSQRQEL
VIGGYVPSTSMKNAIGSLAMGFYDNGKLKHVGRVGTGYTATVAQDLYERLSKIEQEENSF
DDRLTPEERRELVYVKPELVAEVEFRAWSSDDKLRHAAFRGLREDKLAKDVVREMEKTTA
KNLPKSTVTLTHPDRIYWPDEGVTKEGLVNYYAQVWRFMEPYVVNRPLALLRLPDGVEGH
QRFFQKHAWKGMNENIEQITDPKDRGGEKLLRITDFDGVVALVQSAVLEIHPWGTTTDSW
EKPDMITMDLDPGGEVPWESVIAAALEIKERLEAEGLAGFVKTSGGKGLHVVTPLKPKAG
WAEVKAFAKRLADSMAAENPDRYIAKATKAERTGKIFIDYLRNGRGNTAVAAYSTRARPG
ATVSMPLEWSELTADIGPAYFTVDNTPPRLDALPKDPWDGFFAAAKPLEKRKR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttgaaacctatcaggcaaaacgcaacttcggagccacacccgaaccgcgcggc
gccaaaggccgcagtccgggaaacagtttcgtcattcaaaagcacgatgctacgcggctg
cattacgacttccggctggagatggacggcgtcttgaaaagctgggcggtgaccagggga
ccgagcctcaacccggaggacaagcgccttgcggtgcatgtcgaagaccatccgctttcc
tatggcgatttcgaaggcatcatcccgaagggccaatatggcggcgggacggtgatcgtc
tgggaccgcggtacctggacaccgctcggcgatgcgaagaaggcctatcgaaagggccat
atcgaattcgagcttgatggcgaaaagcttaagggccgctggcatctggtgcgaatgcac
gggcagccgggcgaaaagcatgagaactggctgctgatcaagggagacgacaccgaagcc
cgccacgacggcaaggatattttgaaacaacggccggaatcggcaaagaccggacggcgg
atagaagaggttgctaagaacccgaccgatacctggaactccaagccgaagggcgacggc
aaggctgtagcggcaaagaccaagaaggccgggcggcaaatacatgattggcccaaaggc
gccaggaaggcggcgatgccggatttcgtggagccgacgcttgccaagctgaaggccaag
ccgccggccggcgacggctggatccacgagatcaaattcgatggttatcggctgcagatc
cggatcgaaaacggcgaagtgaagatgctgacccgtactgggcttgattggacggaaaag
ttcggcaaggacatcgccgatgctttcaaggcattgccgattcaatcggcgattatggac
ggcgagcttgtcgtcgagcaagatagcggcgcttccgatttctcagcgcttcagcaggac
ttgagccagaggcgctacgatcgtttcgtcttctacacctttgatctgatctatctcgac
ggccatgacctgagggacgtgccgctgatcgagcgcaagcgtctgcttgaaaagatgttg
cctgccgggaacgacaagctgcgttacagcgagcatttcgacgagaacggcagcctggtt
ctggatcacgtctgcaggctgagcctggagggcgttgtctcaaagcagcgagatagcaca
tatacttcgggccgcaggggcgagtggattaaggccaagtgctcgcagcggcaggagctt
gtcatcggtggttatgtgccatcgacctcgatgaaaaatgcgatcggctcgttggcgatg
ggtttctacgacaacggcaagctgaagcatgtcgggcgcgtcggcactggctatacggcg
acggtcgcccaggatctctatgagcggctttcgaaaatcgagcaggaggagaactccttc
gacgacaggctgacgccggaggaacgccgggagcttgtttacgtgaagccggagcttgtc
gcggaagtggaatttcgcgcctggtcctccgatgataaactgcggcatgccgcgttccgc
ggtttgcgtgaggacaagctggcgaaggacgtggtgcgtgagatggaaaagaccaccgca
aagaacctgccgaaatcgactgtcacgctgacgcacccggatcgcatctactggccggat
gaaggggtgaccaaggaggggcttgtcaattattacgcgcaggtctggcgcttcatggag
ccttacgtcgtcaatcgtcctctagctctgctgcgtctgccggacggtgtcgaggggcat
cagcgtttcttccaaaaacacgcctggaagggcatgaacgagaatatcgagcagattacc
gacccgaaggacaggggcggcgaaaaactcctgcgcatcaccgatttcgatggcgtggtg
gcactggtgcaatcggccgtcctggaaatccatccctgggggacgacgacggatagctgg
gagaagccggacatgattaccatggatctcgatcccggcggcgaggttccgtgggagagt
gtcatcgctgccgccctggaaattaaagagcgcctggaagcggaagggcttgccggcttc
gtcaagacgtccggcggcaaaggactgcatgtggtcacgccgctgaagccgaaagcaggc
tgggcggaggtgaaggcctttgcgaaacggctggcggatagcatggctgcagaaaatccg
gaccgttacatcgccaaggcgacgaaagccgagcgcaccggcaagatcttcatcgactac
ctgcgcaatggccgcggcaacaccgcagtcgccgcctattcgacgcgtgcccgaccagga
gcgacagtctcgatgccacttgaatggagcgaactcaccgccgatattggcccggcctac
ttcaccgtcgacaacacgccgccgcggctcgacgcgctgccgaaggacccgtgggatggg
ttcttcgcggccgcaaagccgcttgagaagaggaaacggtag
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