Rickettsia slovaca D-CWPP: MC3_01960
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Entry
MC3_01960 CDS
T01801
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsw
Rickettsia slovaca D-CWPP
Pathway
rsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MC3_01960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsw03019
]
MC3_01960
03009 Ribosome biogenesis [BR:
rsw03009
]
MC3_01960
Enzymes [BR:
rsw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MC3_01960
Messenger RNA biogenesis [BR:
rsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MC3_01960
Ribosome biogenesis [BR:
rsw03009
]
Prokaryotic type
rRNA processing factors
MC3_01960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFD19356
UniProt:
H8LNC1
LinkDB
All DBs
Position
348033..350105
Genome browser
AA seq
690 aa
AA seq
DB search
MNKKIIIDANFPSETRVVLLGQSNNIEDIEFQTTVRQQNKGNIYLAKVTRIEPSLQAVFI
EYGMDKSGFLPFSEIHPNYYNLPTSERNFPVNAFPEIALSNITVEDDKEKPAAIYDSLVD
SEEIDLKTIEDLVESKFQSELNLEAADDIEMIQSGTPESNIPQYKQYKVQEVIRKNQILL
VQVTKEERGNKCAAFTTYISLAGKYCVLMPNKGSQNGISRKISNGEERKRLKDILNKIVS
GDKNAYSVIVRTAGRGSSTLDLKKDYNYLARLWNKIRKSTIKFPAPCFIHEEDSIIRKTI
RDMCDHNVKEVVIQGQDGYEDASKFMQDLLPSELVKLKEHKSKTPIFTKFQVEEQLVKLY
QPVVTLPSGGYIVINPTEALIAIDVNSGKSTSEQNIEETALKTNLEAAKEVAKQVKLRDL
SGLIVVDFIDMSEAKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRSSFLET
NSAICSHCNGKGVIRASDANAMLILRTIENEIFEERIDVINVFTNIVSVLYLLNNKRAEI
KFIEEKYNIKLNFYSDPNATSDSYSIEKVKLFKKNNNNFNSVKPVIQNHNADYTEEELKK
EQLRKNKHKWKTANNSNNVANEVKDKSLEAEESVEQTVSVVEEVQVVESNAGLEEAQAAP
KKTKRRYRNKTSNKKCPSNTVEDTEKNAES
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaagattataattgatgctaattttccaagcgaaacaagagtagttttatta
ggacaaagcaacaatatagaagatattgaatttcaaacaaccgtaagacaacaaaataaa
ggtaacatttatttagcaaaagttacaagaatagaaccgtcgctacaagctgtttttata
gagtacggaatggataaaagcggttttttaccgtttagtgaaatccatcctaactattac
aatttgcctacctcggagagaaattttccggttaatgcttttcctgaaatagctctttca
aatattacggttgaggatgataaagagaaaccggctgctatatatgattctttggttgat
agtgaagaaattgacctaaaaaccatagaagatttagtagagagtaaattccagtcagaa
cttaatttagaagcggctgatgatattgaaatgattcaaagcggtacccctgagtcaaat
attccgcaatataaacaatataaagttcaagaagtaataagaaaaaaccaaatattatta
gtgcaggttactaaggaagaacgaggaaataagtgcgccgcttttactacttatatatcc
ttggctggtaaatattgtgttttaatgcctaataaaggttcgcaaaacggtatatcgcgt
aaaatatcaaacggggaagaaagaaaaagactgaaagatattttaaataaaatagtaagc
ggtgacaaaaatgcttatagcgtcattgttagaaccgcaggtagaggaagtagcacctta
gatttaaagaaagactataattatttagcaaggttatggaataaaattcgtaaaagtact
attaaatttccggctccgtgttttattcatgaggaagatagtataatacgtaaaaccata
cgtgatatgtgcgatcacaatgttaaagaggtggtaattcaaggacaagacggttatgaa
gacgcttcaaaatttatgcaggatttattaccttcagagcttgtaaagctgaaagagcat
aaaagtaaaactcctatatttactaagtttcaagtagaagagcaattagttaaattatat
cagcctgtagtgacgttaccttcaggaggatatatcgttattaatcccacggaagctctt
attgcaattgatgtaaattccggtaaatcaacttctgaacaaaatattgaagaaacggca
ctgaaaactaatttagaagcagccaaagaagtagcaaagcaagtaaagcttagagatcta
tcaggtttgatagttgttgattttatagacatgagcgaagctaagaatcgtaaaattatt
gaacgatcctttaaagagtttttaagtcgtgatcgtgctcgtatacaaaccggtaatatt
agtcagtttggactactggaattctcaaggcagagattacgttcttctttcttagaaact
aattcggcaatttgttctcattgtaacggtaaaggagtcattagagcaagtgacgctaat
gctatgttaattttacgtactatagagaatgaaatttttgaagaaagaattgatgtaata
aatgtttttaccaatattgtttcagttctttatctacttaataataaacgtgctgagata
aaatttattgaagaaaaatataatataaagcttaatttttattccgatcctaatgctaca
tcagatagttattcgattgaaaaagtgaagctgttcaagaaaaataacaataattttaat
tctgttaagccggtaattcagaatcataatgccgattatactgaagaagagctgaaaaaa
gaacagttacgcaaaaataaacataaatggaaaacagctaataatagtaataatgttgct
aatgaagtaaaagataagagtttagaggcagaagaatcggtggagcaaaccgtaagcgtt
gtggaagaggtgcaagttgtagaaagtaatgccggcttagaagaagcacaagctgctcca
aaaaagacaaaacgtagatatcgtaataaaacatcaaataagaaatgtccttctaatacc
gtcgaagatacggaaaagaatgcagagtcttga
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