Rhizoctonia solani: RhiXN_00843
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Entry
RhiXN_00843 CDS
T09256
Name
(RefSeq) mRNA 3'-end-processing protein YTH1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rsx
Rhizoctonia solani
Pathway
rsx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
RhiXN_00843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsx03021
]
RhiXN_00843
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_00843
Transcription machinery [BR:
rsx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
RhiXN_00843
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
RhiXN_00843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCHC
zf-CCHC_3
zf-CCCH_4
zf-CCHC_2
zf-CCHC_5
zf-CCCH_RBM22
zf-CCCH_9
Motif
Other DBs
NCBI-GeneID:
67023125
NCBI-ProteinID:
XP_043179674
LinkDB
All DBs
Position
4:join(2546314..2546446,2546502..2546852,2546905..2546998,2547056..2547260,2547316..2547432)
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AA seq
299 aa
AA seq
DB search
MASQASDPLTQNPSLADVVHPDFHQVNSTVELYIKNQLGLKLDTDEQICRLALTPAGCPL
GPRHCPLRHTTPSPLNFGSQDGTSGNPGRDRLATVCKHWLRGLCKKGDGCEFLHEYNLRR
MPECWWFARHGTCTAGDECLYAHPKERKIECPDYQRGFCKLGPDCPRKHVRRVACQLYLS
GFCPDGPECKRGHPKPGIPPPEAYRPPSPPSQRDLGPPPPGWGRFTEHGVGPNGPGGSFV
VGQNNTGFVPRRNLDDVLCFKCGQKGHYANTCRNKNVPGNRGGQERGTYRPYSNDDSNE
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atggcatcccaagcatctgatccactgactcaaaatccttcgctcgcggatgttgtacac
cctgattttcatcaagtgaattctacggtggagctttacattaagaatcaattgggacta
aaactggatacagatgagcaaatatgccgccttgctttgacacctgctggatgcccgctc
ggcccgagacactgtccgttgagacacaccacacccagtccgctaaatttcggttcacag
gacggtacttccgggaacccgggtcgtgatcgacttgccaccgtctgcaagcattggttg
cgtggactttgtaaaaagggagatggatgcgagtttttgcatgaatacaacctacgacgt
atgccagaatgttggtggttcgctcggcatggaacatgcacggctggtgacgaatgccta
tacgcacatccaaaggaacgaaaaattgagtgccctgactaccaacgaggcttttgtaag
ctaggaccggattgtcctcgaaaacatgtcaggcgtgttgcgtgtcagttatacttaagc
ggattttgccctgatggaccagaatgtaaacgtggccatcccaaacctggcattcctcct
cccgaagcatacagacccccatctccaccgtctcaacgcgacctaggccctcctccgcca
gggtggggacgtttcaccgaacatggagtgggaccaaatggaccaggtggtagctttgtt
gttggccagaataacacaggatttgttcccaggcgtaatttggacgacgtattatgtttc
aagtgtgggcaaaaaggtcactacgccaacacatgtcggaacaagaacgtacctggaaat
cgtggcggacaggaaagaggcacttaccgaccgtattctaacgatgacagtaatgaataa
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