Rhizoctonia solani: RhiXN_00997
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Entry
RhiXN_00997 CDS
T09256
Name
(RefSeq) RNA recognition motif protein
KO
K12881
THO complex subunit 4
Organism
rsx
Rhizoctonia solani
Pathway
rsx03013
Nucleocytoplasmic transport
rsx03015
mRNA surveillance pathway
rsx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
RhiXN_00997
09122 Translation
03013 Nucleocytoplasmic transport
RhiXN_00997
03015 mRNA surveillance pathway
RhiXN_00997
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_00997
03041 Spliceosome [BR:
rsx03041
]
RhiXN_00997
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
RhiXN_00997
TREX complex
RhiXN_00997
Spliceosome [BR:
rsx03041
]
Complex C
Other components
EJC/TREX
RhiXN_00997
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
RhiXN_00997
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
RRM_PARP14_3
RRM_7
PNMA_N
RRM_3
GlcNAc-1_reg
Motif
Other DBs
NCBI-GeneID:
67023279
NCBI-ProteinID:
XP_043179828
LinkDB
All DBs
Position
4:join(2939642..2939674,2939732..2939947,2940000..2940153,2940576..2940696,2940755..2940869,2940922..2940957)
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AA seq
224 aa
AA seq
DB search
MSAELDKSLDQIMQSRPKNRRGASRRSSAPASTSARQRYAGAAPESKRGQVPASTAGGAP
AQSIAQKIMVSGLPPDVNEEQIKELFQSTVGSLSSVQLNFDSQGRSKGTATVIFQKKGDA
NKAFSQYNNRLIDGKRPMKIEIVMDPTKVPPPPLASRVAPAPEAKQPAAAKATAGGDAKP
KTGKPGRAGRGRRRKNNNERPAKSAADLDAEMEVYKATPDEATA
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaacttgacaagtctcttgaccagatcatgcaatcgcgccctaaaaaccgc
cgtggagctagccgtcgctcgagtgccccagcatcgactagtgctcgtcagcgctacgcg
ggtgctgcacccgagtcgaagcgtggtcaagttccggcttctaccgccggcggtgcccca
gcgcaatcgattgcccagaagattatggtctctggccttccacccgatgttaacgaggag
caaatcaaggagctcttccaatccaccgtcggctctctgagctccgtccagctcaacttt
gattcgcaaggtcgctccaaaggcactgccacggttattttccagaaaaagggcgacgcc
aacaaggccttttctcagtacaacaaccgccttatcgatgggaaacgcccgatgaagatc
gaaatcgtcatggaccccaccaaggttcctcccccacccctggcttctcgtgtggctcct
gctccagaggccaagcaacccgctgccgccaaggctactgcaggtggggatgcgaagccc
aagaccggcaaaccaggacgtgctggacgtggtcgccgtcgcaagaacaacaacgaacgc
ccagctaaatctgctgctgacttggatgctgagatggaggtttacaaggcaacccctgat
gaggcaactgcatga
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