KEGG   Rhizoctonia solani: RhiXN_01056
Entry
RhiXN_01056       CDS       T09256                                 
Name
(RefSeq) mRNA splicing factor
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03040  Spliceosome
rsx04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    RhiXN_01056
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    RhiXN_01056
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsx03041]
    RhiXN_01056
   04121 Ubiquitin system [BR:rsx04121]
    RhiXN_01056
   03400 DNA repair and recombination proteins [BR:rsx03400]
    RhiXN_01056
Enzymes [BR:rsx01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     RhiXN_01056
Spliceosome [BR:rsx03041]
 Complex B
  Other components
   Prp19 complex
    RhiXN_01056
 Complex C
   Prp19-CDC5 complex
    RhiXN_01056
Ubiquitin system [BR:rsx04121]
 Ubiquitin ligases (E3)
  U-box type E3
   RhiXN_01056
DNA repair and recombination proteins [BR:rsx03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    RhiXN_01056
SSDB
Motif
Pfam: WD40_Prp19 Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WD40 Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WDR55 WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_WDR19_1st U-box WD40_RFWD3 Beta-prop_Vps41 Beta-prop_EML zf-Nse Beta-prop_WDR75_1st Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_RIG_1st PEP5_VPS11_N zf-NOSIP Cep57_MT_bd DUF7165 PT-TG B-prop_COPA_B_2nd Beta-prop_NWD2_C ADIP Beta-prop_VPS8
Other DBs
NCBI-GeneID: 67023338
NCBI-ProteinID: XP_043179887
UniProt: A0A8H7IJX5
LinkDB
Position
4:join(3121213..3121234,3121292..3121438,3121490..3121706,3121753..3121896,3121948..3122989)
AA seq 523 aa
MFFCAISGEPPQDPVISSKSGHIYERRLITKYIAENGTDPLTGEKLEEGDLLAVKASPKA
APPRPPTLTSIPALLHTLQNEWDALMLETFALKQQYNSTRQELSHALYQGDAATRVVARL
IKERDSARDALARVQESIGVTPAPAPEAAASDVDMNTDEGGVLPAEISKEIVETQEKLSS
ARRKRKAPASYVSTAQVRTFKPKTTISSLHSASTPGINSLAISSVTPPDGGNLEEPSLFL
TGGNDKIVQLYDRAAGRVLASLKGHTKKVTHVAFCETGGESINRTLLSASADKTARVWSH
DTASGEYIPKHTVKLHKGEITGLAVHPTRSLFALASADKTYSIHSLSTFQSVYQSPILTD
PPPEAFTSLSIHPDGQLLAVGTTAGIVQVYDIRQGSLAASLAGEKSSGYSINTLSFSENG
YQLAAPSSPSSVAIWDLRKLKTSATVPFADSFKINKLTYDSSAHYLAVAGSEGIKVLLHK
TFEEVLSIDDAGDVMDAAFAGANGLELWGVGPREVKIWGPGEN
NT seq 1572 nt   +upstreamnt  +downstreamnt
atgtttttctgtgccatctctggagagccgcctcaagaccccgtgatttctagcaagtcg
gggcatatctacgagcgccggctcatcacaaaatatattgcggagaatggcacagaccct
ctcacgggtgaaaaactggaggagggtgacttgctagctgtcaaagcgagtcccaaggct
gctccaccacgaccaccgactttaacgtcgatacccgctttgttgcacacgttgcaaaat
gaatgggatgccttgatgttggaaacattcgctctcaagcagcaatacaattcgacgcgc
caggagctgtcgcatgcattgtatcagggtgacgcagctactcgcgttgtcgccaggctc
atcaaagaacgcgactcggcccgagatgcattggctcgcgtccaagagtctattggagtt
acccctgcgcctgctcctgaagctgctgcgtcagatgtcgatatgaacaccgacgaaggt
ggtgttctccccgcggaaatctcaaaggagattgtcgaaacccaggaaaagctttcttcg
gcgcgtcgcaagcgaaaggctccggccagctatgtctctacggcccaagttcgcactttc
aaaccaaaaactaccatatcctctctccattcggcctctactcctggtatcaactccttg
gcgatttcttcggtcactcctcccgatggcggcaacctagaagagccttcgctgttcctt
actggtggcaacgacaagattgttcagctctacgaccgcgctgctggacgcgtcttggcc
tctctcaaaggacacaccaaaaaagtcacacatgtcgcattttgtgaaacgggtggcgag
tccatcaaccgaacgttactctctgctagcgcggacaagactgccagggtctggagtcac
gatacagcgagcggagaatacattcccaagcacacggttaaactccacaagggcgaaatc
actggtctggctgtccacccaacacgttcactgtttgcactcgccagtgcggacaagacg
tactcgattcattccttgtcgacgttccaatccgtgtaccaatctcctatcctgaccgat
cctcccccagaggcgttcacttcactctctatccacccagacggtcagctccttgctgtt
ggcacaactgctggaatcgtccaagtatacgacattcgccaaggttctctcgcagcctcg
ctcgcaggtgaaaagtcgtcgggctactcgatcaataccctcagcttctctgaaaacggc
taccaactcgctgcaccctcgtctccgtcgagcgttgcaatttgggacttgcgtaaactc
aagacctcggcgaccgtgccattcgcagattcgttcaagatcaacaagctcacgtacgac
tcgagtgcgcactacttggctgtcgcaggttcagaaggcatcaaggtgctgttgcacaag
actttcgaggaggtattgagcatcgatgatgctggggatgttatggatgctgcatttgcg
ggcgcgaatggcctcgaactttggggcgttggtccgcgggaagttaagatttggggacca
ggcgaaaattga

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