Rhizoctonia solani: RhiXN_01459
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Entry
RhiXN_01459 CDS
T09256
Name
(RefSeq) 3' exoribonuclease family domain-containing protein
KO
K12590
exosome complex component RRP46
Organism
rsx
Rhizoctonia solani
Pathway
rsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RhiXN_01459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_01459
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RhiXN_01459
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
YscW
DUF3852
Motif
Other DBs
NCBI-GeneID:
67023741
NCBI-ProteinID:
XP_043187101
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All DBs
Position
16:join(762866..762965,763027..763140,763203..763588,763638..763748)
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AA seq
236 aa
AA seq
DB search
MSRPDGRANDQLRRIEIELGGLARVDGSARFSFGNCRALASVTGPIEVRQLIELPDRATF
EVTVRPVAGVPATPEKALAKHVHDVFRPTLLLTQHPRSLIQLTILSLSPASSSPSYAATH
INAATLALLNAASVPMKGVVCAVVVGISKTGDVVLDPADDGECIRAGCFALFFSGAEAPE
GDIVWADWRGATSKEEASVLYESAVRLARTGAKQVLVSIQSSLLRRGKSDSQMDLS
NT seq
711 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgaccagacggacgcgcaaatgatcaactcagaaggatagaaattgagctcggt
ggacttgctcgtgtagatggaagcgcacgtttcagctttggtaattgcagagcactcgcc
tcggtgacaggcccaatcgaagttcgacaactgatcgaattgcctgatcgtgcaacattt
gaagtgaccgttagacctgttgctggcgtacctgccacccccgagaaagcccttgctaaa
cacgttcatgatgtctttcgtcccacgctactcctaactcaacacccccgatcgctcatt
caattaacaatcctctcgctttctcctgcatcatcgagcccaagctatgctgcaacgcac
atcaacgctgcaactcttgccttgttgaacgcagcaagcgtacccatgaagggcgtggtg
tgtgccgtagtcgttgggatatcaaaaactggagacgtggtattggaccctgctgacgat
ggagaatgcattcgcgctggatgttttgcccttttcttttcgggagctgaggcgcccgaa
ggagatattgtttgggctgattggagaggtgcgacttcgaaagaagaggcaagtgtactc
tatgaaagtgctgtaagactagctcgaactggagccaagcaggttcttgtctcgattcaa
agctcgttgctccgtcgagggaaaagtgactctcaaatggacttgtcctag
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