Rhizoctonia solani: RhiXN_01941
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Entry
RhiXN_01941 CDS
T09256
Name
(RefSeq) Smg-4/UPF3 family protein
KO
K14328
regulator of nonsense transcripts 3
Organism
rsx
Rhizoctonia solani
Pathway
rsx03013
Nucleocytoplasmic transport
rsx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
RhiXN_01941
03015 mRNA surveillance pathway
RhiXN_01941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_01941
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
RhiXN_01941
mRNA cycle factors
P-body specific factors
RhiXN_01941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
67024223
NCBI-ProteinID:
XP_043187583
UniProt:
A0A8H8P862
LinkDB
All DBs
Position
16:complement(join(2152547..2152896,2152949..2153029,2153082..2153177,2153229..2153338,2153392..2153609))
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AA seq
284 aa
AA seq
DB search
MSSATKAEPPGKAKSKPSRTKQSASSNAPKLKVVIRRLPPNLPENIFWQSVAQWVTDESS
SWKLYVPGKLRTKLNRENTPSRAYVEFVTPEAVVAFSRDYNGHVFRDKQGNESAAVVEYA
PYQKVPHEKRKADAKIGTIETDEDFISFLEALNKPAEPTPDVNELVTQGTTAIAEPTSTP
LLDALKAAKEANTIKGYHSHYRDQPTQPRHRVQDLEDAETFSRKVPLKNQQDLAHPIREM
WKRARRKKEKEKEGGGKRGKNKQKRKLPEQAPVPSHPSPQPHNQ
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcagcaactaaagcagaaccgcccgggaaagccaaatccaaaccttcgcgaacc
aaacagtctgctagtagcaatgcacccaagctcaaagttgtgattcgtcgattgccgccc
aatcttcctgagaacatattctggcaaagtgtcgcccaatgggtaaccgacgagagttcg
agctggaagttgtatgttccgggtaaacttaggaccaaactcaatcgagaaaacacacca
tctcgggcctatgtagagttcgtaacacctgaggccgtggtcgcattcagccgagactat
aatgggcacgtgtttcgcgacaagcagggcaatgaatcggcggctgtggtagagtatgca
ccttatcaaaaagtgccacacgaaaagcgcaaggccgacgccaagattgggacgattgaa
acagatgaagacttcatctccttccttgaagcactgaataaacccgctgaaccaactccc
gatgtaaatgaactcgtgacacaaggtaccacggcgatcgcagagccaacctcgacacct
cttcttgacgcgctcaaagcagctaaagaggccaacaccataaaagggtatcattcgcat
taccgtgatcaacccactcagccccgacatcgggtacaagatctcgaggatgcagagaca
tttagtcgcaaagttcccctgaagaaccagcaagatttagcccatccgatacgagagatg
tggaaaagagcaaggagaaagaaagaaaaagaaaaagaaggaggcgggaaaaggggtaaa
aataaacagaagagaaagctcccggaacaggccccggtcccaagtcacccaagcccgcag
ccgcacaatcaatag
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