| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts protein
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| KO |
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| Organism |
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:rsx00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
RhiXN_02355
03015 mRNA surveillance pathway
RhiXN_02355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:rsx03019]
RhiXN_02355
Enzymes [BR:rsx01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
RhiXN_02355
5.6.2.5 RNA 5'-3' helicase
RhiXN_02355
Messenger RNA biogenesis [BR:rsx03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
RhiXN_02355
mRNA cycle factors
Common to processing body (P body) and stress granule
RhiXN_02355
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
16:join(3405199..3405511,3405558..3405792,3405846..3406094,3406148..3406422,3406477..3406643,3406692..3407301,3407356..3407414,3407473..3407780,3407831..3408173,3408226..3408421,3408474..3408940)
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| AA seq |
1073 aa
MDTFDNFQSEYGGIGDDDTASIISGYTQRTGAGPSKLSLNAADALDLDALSIADDHVANR
RSELANDFAGGLDDDFDVNLEDNGIGVDLPEYACRQAQLVLFTAASVVKCLVCSKWFCNS
RGNTAASHIVNHLVRAKHKEVVLHAESPLGETTPECYNCGSKNAFMLGFIPAKSDTVVVL
LCRQPCAAISKDISWNTALWAPLIEDRSFLSWLVTPPSEQEQLRARQITYAQINRLEDLW
RDNANATLEDLEKPGVDDEPQPILQRYEDAYQYQNIFGPLVKIEADYDKRLKESQTQDDV
VVRWDQGLNQKRIAWFNFPKLESGEVRLAVGDELRLRYHGDSHHAWEGSGHVLKIPNNIS
DEIGLELRRNDGVPVDCTHGFSVDFVWKSTSFDRMQLAMKTFAIDEKSVSGYIYHKLLGH
DLEPTILRTQMPKRFSAPGLPELNHSQMYAVKSVLQKPISLIQGPPGTGKTVTSASIVYH
LAKMNPGQVLVCAPSNVAVDQLTEKIHATGLKVVRLTAKSREALESSIAFLTLHRQVAAY
TSHTELQKLIQLKNELGELSQSDERKYKTLVRNVEREILAAADVICCTCVGTGDPRLSKL
KFRTVLIDEATQAAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAARAGLTQSLFERL
VLLGNRPIRLQVQYRMHPCLSEFPSNMFYEGTLQNGVTAPERLRKNVDFPWPVADTPMMF
YQNLGQEEISSSGTSFLNRTEASNVEKIVTKFFKAGVVPAQIGVITPYEGQRSYIVTYMQ
YHGTLKKDLYKDIEVASVDAFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRSKY
GVVILGNPKVLSKHPLWHYLLTHYKEKQCLVEGPLNNLQPSMIQFSKPRRALNKSMEQFR
RHDYSDAEATSGAPVLNDARRASTSAYESGFYRTHDPLGYIPSDIQSVKSSASGLPHFGT
AAPFGPSKQKAVAGQKRATYASYASSIISQDVAGVPGGTDASSVSGSQFEHNGSIVFSQS
DRIRRRNSFTSMAGTSDIGSMSAYDYKSQDSVIDADDSESQYAHSVQSGVTEF |
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| NT seq |
3222 nt +upstreamnt +downstreamnt
atggacacattcgacaactttcagtctgaatacggtggaatcggagacgatgacaccgct
tcgattatctctggatatacgcaaagaacaggagccggtccttcgaagctctcgttgaac
gcggcagacgcgttggaccttgatgccctttctattgccgacgatcatgtggcaaacagg
cgatcagagctggccaacgattttgccggaggactagatgatgactttgacgtcaactta
gaggataacggaataggagtcgaccttccggaatatgcgtgcaggcaagcacaactcgtg
ctcttcacggcagcctcggtagtcaagtgcttggtctgctcaaaatggttctgcaactcg
agaggaaatacagcggcatcccacatcgtcaatcatctggtcagggcgaaacataaggag
gttgtattgcatgccgagagtccgcttggagaaaccaccccagagtgctacaactgcgga
agcaagaatgctttcatgcttggcttcatcccagccaaaagcgatactgttgttgtgttg
ctttgtcgtcaaccctgtgcggctatatctaaagatatctcttggaatactgcgctctgg
gccccacttatagaggatcgatcattcttgtcgtggctggtcacacctccttccgaacaa
gagcagctacgtgcgcgacagattacatacgcccagatcaatcgattagaggacctatgg
agagacaatgcgaatgctacgcttgaagatctggaaaaaccaggagtagacgacgagcct
caacccattctccaaaggtacgaagacgcctatcagtaccagaacatctttggtccacta
gtgaaaatcgaggccgattatgacaaacgactgaaagagtctcaaactcaagacgatgtg
gtagtgcgatgggaccaaggcctcaaccagaagcggatagcctggttcaactttcctaaa
ctcgaaagcggcgaggttcgtttggcagttggagacgagctgaggttgcgctatcacggt
gatagccaccatgcttgggaggggtctgggcacgtcttgaagattccgaataatatctcc
gatgaaattggtttggaactaagaagaaacgatggtgttcctgttgattgtacccacggc
ttctcagtagattttgtctggaagtcgacgagcttcgataggatgcagctagctatgaaa
acgttcgcgattgacgaaaagagcgtcagcggttacatttatcataaattgttaggtcac
gaccttgagccaactatcctacgaactcaaatgcctaagcgcttctcagctcctggcctt
ccggaacttaaccactctcagatgtacgcggtgaaaagcgttctccagaaaccgatatct
cttattcaggggccacccggtactggcaagactgtgacatctgcgtcgattgtttatcac
ttggccaaaatgaatcctggccaagtcttggtctgcgcaccctccaacgtcgcagtcgat
caactaacggaaaagatacacgctaccggcctcaaggtcgtccgccttactgccaagtcc
cgagaagccctcgaaagttcgatagcgttcttgaccctccatcgacaagtcgctgcctac
acgtctcacaccgagctccagaagcttatccagctcaaaaacgaactgggagagctgagt
caatccgacgagagaaagtacaagacacttgtcaggaacgtcgagcgagagatcttggct
gcagccgatgtcatttgctgtacatgcgttggaacgggggaccccaggctatccaaacta
aagtttagaaccgtcttgatcgacgaggctacacaagctgctgagccagagtgtatgata
cctttggtcttaggatgcaagcaggtggtgctagtcggagaccatcagcaacttgggcct
gttatcatgaacaaaaaagccgctcgagctgggctgacccagtctctcttcgagcggctg
gtccttcttggtaaccgaccgattcggcttcaagttcaatatcgcatgcacccctgtctt
tcagaatttccttcaaacatgttctacgagggtaccttgcaaaacggtgttactgctccc
gagaggctccgcaagaacgttgatttcccatggccagttgccgacacaccgatgatgttt
taccagaatctaggccaggaagagatttcgtccagtggaacctcattcttgaatcgaacc
gaagcttcgaatgtcgaaaaaatcgtgaccaagttcttcaaagcaggggtagtcccggcc
caaatcggtgtcatcaccccttacgaaggccaacgctcatatatcgttacatatatgcag
taccatggaacactcaaaaaggatctatacaaggatatcgaggtggcgagcgttgacgcg
ttccaaggccgcgagaaggactacatcatacttagctgcgtacgaagcaacgagcatcag
gggattgggtttttgaacgatccaagacgtttgaacgttgcgcttactcggtccaagtac
ggagttgtaatcctgggtaatccgaaagttctcagcaaacatcccctgtggcactatcta
cttacccattacaaggagaagcagtgcctggttgaaggtccacttaacaacttacaaccc
agtatgatacagttcagtaagcctcgacgggcgctgaacaagtctatggagcaattccgc
cgtcatgactatagcgatgccgaagcgaccagcggggcgcctgtattgaatgatgctcgc
cgtgcttctacaagcgcgtatgagagtggcttctaccgtacccacgacccacttggatat
attccttcggatattcaatcagtcaaatcttcagcgtccgggttaccacactttggcacc
gctgctcccttcggtccttccaaacagaaagcggtggctggtcagaaacgagcgacatac
gctagttatgcgagctcgatcatctcccaggatgttgctggagtcccgggaggaacagac
gctagcagcgtttccggatctcaattcgaacacaacggaagcattgtattttcacaatca
gatcgaattagaagacgcaactcgttcacctcaatggcgggtacatcggatatcgggagc
atgtcggcgtacgattacaagagccaggatagtgtgattgacgcggatgactcggagtcg
cagtatgcacatagtgtacaaagcggagttacggagttttga |
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