Rhizoctonia solani: RhiXN_02788
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Entry
RhiXN_02788 CDS
T09256
Name
(RefSeq) DEAD/DEAH box helicase
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rsx
Rhizoctonia solani
Pathway
rsx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
RhiXN_02788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsx03041
]
RhiXN_02788
03009 Ribosome biogenesis [BR:
rsx03009
]
RhiXN_02788
Enzymes [BR:
rsx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RhiXN_02788
Spliceosome [BR:
rsx03041
]
Complex A
U1 snRNP components
U1 related factors
RhiXN_02788
Complex B
RhiXN_02788
Ribosome biogenesis [BR:
rsx03009
]
Eukaryotic type
Pre-60S particles
Helicases
RhiXN_02788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
67025068
NCBI-ProteinID:
XP_043178101
UniProt:
A0A8H8SU50
LinkDB
All DBs
Position
3:complement(join(1254164..1254296,1254354..1254559,1254612..1254668,1254721..1254746,1255068..1255232,1255489..1255574,1255627..1256040,1256090..1256553,1256604..1256873,1256921..1256923))
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AA seq
607 aa
AA seq
DB search
MGDYGSRGYGGGYGGGGGGGGGGGGYGGGGYGGGSYGGGDRMGGLGGGLRSVDWASQTLT
KFEKNFYREHPKVSARSDAEIADFRKQKEMKVQGRDIPRPVTTFEEAGFPDYILTTIKMQ
GFTSPSPIQCQAWPMALSGRDVVAIAQTGSGKTISFALPAMLHINAQPLLSPGDGPIALV
LAPTRELAVQIQQECTKFGSNSRIRNTAIYGGAPKGPQIRDLQRGVEIVIATPGRLIDML
ETGKTNLRRITYLVMDEADRMLDMGFEPQIRKIVGQIRPDRQTLMFSATWPKDVQKLASD
FLTDFMQVNIGSMELTANHNIKQNVEICTDFEKRSKLIKHLDQISSENAKVLIFVGTKRV
ADDITKYLRQDGWPALAIHGDKEQRERDWVLGEFKSGRSPILIATDVASRGLATQLWDVS
WSVAALGLFPELVATGLVPELLSGVPTRFVLVEPTHLFAQAIRDIVSDVKDVGYVINYDF
PNNCEDYIHRIGRTGRAGQKGVSFTYFTTENAKQARELITILREAKADIPSQLEEMAMYG
GGGGGRGRYGGGGGRGGGRGGRDGGYGGRDNGYGNREGGYGSRDRDSHGGGRGGGRGGGY
GGGDSRW
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgggtgattacggcagccgcggatacggtggtggttatggtggtggtggtggcggcggc
ggcggcggcggaggctatggcggtggaggctacggtggaggaagctatggcggaggcgac
cgcatgggtggcctcggtggtggcctccgatccgttgattgggcctcgcaaacgttgaca
aagtttgaaaagaacttttaccgcgagcaccccaaggtttctgcccgctctgatgccgag
attgcggacttccgtaaacagaaagagatgaaggttcaagggcgtgacattccccgcccg
gtgacgacctttgaggaggctggtttcccagactacattctcactactatcaaaatgcaa
ggctttacttctcctagtcctatccagtgccaggcctggcctatggcgcttagtggacgt
gatgtcgtcgccattgcccagaccgggtccggaaagaccatctcgtttgctcttcccgct
atgcttcacatcaacgcccagcctcttctcagccccggagacggccccattgcgcttgtc
cttgctcccactcgtgaactcgctgttcagatccagcaagagtgcaccaagtttggatcc
aactcgcgtattcgtaatactgccatttacggaggcgctccaaagggtcctcaaattcgt
gaccttcaacgaggagtagagattgtcattgctacccccggtcgtttaattgatatgctc
gagactggcaagaccaatttgcgccgcatcacctaccttgtcatggacgaagccgaccgc
atgcttgacatgggtttcgagccccagatccgaaagattgttggccaaatcagacctgat
cgtcaaacgctcatgttcagcgcaacatggcccaaggatgtccaaaagctcgcctccgat
ttcttgaccgactttatgcaagtcaacatcggctcgatggaactcaccgcgaaccataac
atcaagcagaacgtcgagatctgtaccgatttcgagaagcgcagcaagctcatcaagcac
cttgaccagatcagcagcgaaaatgccaaggtcttgatctttgtaggcactaagcgagtt
gcggacgatatcaccaagtacttgagacaagatggctggcccgcactcgccattcacggt
gataaagaacaacgcgagcgtgactgggtgctaggcgagttcaagagtggacgttcgcca
attttgatcgctacggatgtagcgagtcgtggtctcgccacgcagctctgggatgtgtcc
tggagtgttgcggctttgggactgttcccagagttggtagccacgggactcgtcccagag
ctgttgtcgggagtcccgacgagattcgttctcgtcgagcccacccatctctttgcacag
gccattcgagatattgtatctgacgtcaaggatgttggatacgtcattaactatgacttc
cctaacaactgcgaagactatattcatcgtatcggtcgtacagggcgcgctggccaaaag
ggtgtctcattcacttactttaccacagagaacgctaagcaagcgcgcgaattgatcaca
atcttgcgcgaagccaaggctgatattccttcgcaactcgaggagatggccatgtacggc
ggcggaggtggaggacgtgggcgctacggtggcggaggaggacgtggtggaggccgaggt
ggccgtgatggtggttatggcggacgcgacaatggctacggaaatcgtgaaggcggttac
ggcagccgtgatcgcgactcacacggcgggggtcgtgggggtgggcgcggtggaggatat
ggcggcggtgacagccgatggtga
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