Rhizoctonia solani: RhiXN_03222
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Entry
RhiXN_03222 CDS
T09256
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
rsx
Rhizoctonia solani
Pathway
rsx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
RhiXN_03222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_03222
03041 Spliceosome [BR:
rsx03041
]
RhiXN_03222
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
RhiXN_03222
Spliceosome [BR:
rsx03041
]
Complex B
Other components
Prp19-related factors
RhiXN_03222
Complex C
RhiXN_03222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
TPR_2
Suf
Mad3_BUB1_I
ARM_TT21_C
ARM_TT21
DALR_1
Motif
Other DBs
NCBI-GeneID:
67025502
NCBI-ProteinID:
XP_043178535
UniProt:
A0A8H8SVM0
LinkDB
All DBs
Position
3:complement(join(2545818..2546345,2546400..2546585,2546635..2546721,2546775..2546834,2546886..2547026,2547077..2547155,2547208..2547449,2547521..2547691,2547749..2547883,2547937..2548641,2548693..2549229))
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AA seq
956 aa
AA seq
DB search
MDSLDALRSVLPLTVPIPSPVNNTSLLTPKDIAREEDLLRNPGSLQAWWTAIQIAKEQAI
ASQKTQALGNPLLGPLANPTARSNLQRLTYLFESALVHFPRSYKLWKAYLSMRTYYVLGK
ATKQKRSGARKKYATMQEMIEEDEFDAESWEGGLNGVVGWEEWKALVGVYERALMWLPTM
PRLWLNYLTIFNHPCLPPGFSKTHVRRTYDRALRTLPPSLHNRIWPRYLIWAERTGGPTT
VAVFRRYIAVDPSMTEHYTKLLIEMKRPLEAAKLLLGLARKAARGEYESPEGKSPYQLLG
EWLDVVEAWAEDVGLDPDEIKPAEEPSKKEEEKVEPVSSTGTLIRLAGPMIPADGSGKPA
ETRLYDPDEDPTNTQKLDIEKIIHKDGLEMYKDQAGRLWTGLATYWIKRGEFDRATETFE
KGMASVLTIRDFTQIFDAYAEFCETLISALMDELASPEDDEDTAETEAELDTRMRAFEKL
MDRRPFLVNDVLLRRNPNDIQEWEKRVALWGADDEKVAETYTTALKTINPKKTTANAHQL
YVNFAKFYESGGVEGQNPKDLESARRVLEKATKVEFKHVDELAEVWIEWSDMEIRNENFD
EAIRVMQRATAIPKNVKINYHDQSLPVQARLFKSLKLWSCYVDLEEAIGTVESTKAVYDK
MLELKIANAQVIVNYASFLEDNNYFEDSFKVYERGVELFTFPIAFELWNIYLAKFIKRYG
GSKLERARDLFEQALEKCPEKHCKPLFLMYAQLEEEYGLAKRAMDIYDRATRVVLDQDKF
DMFTIYIAKASSLYGLPATRPIYERALQVLPNKQTAELCLRFAQLERKLGEIDRARAIYA
HASQFCDPRTSTEFWKAWNTFEIETGSEDTFREMLRIKRSVQAQYNTEVSFLAAQAQGAK
KAALEKELATAKTDAMAQVEAKTAPSFVAGKKDVPANGQENGEGNADEIQIDDEEF
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atggactcgctcgatgcgctgcgttctgttctcccgttgacggttccgataccgtcgccg
gtgaataacacatcgctacttactcccaaagacattgcacgtgaagaggatttgttgcgt
aatcctggatcgttgcaagcatggtggaccgcaatccaaatagccaaagaacaggcgatc
gcgtcccaaaaaactcaggcactgggaaaccccctgctgggtccactggccaatccaacg
gcacggagcaatctccaacgactgacttatctattcgagtctgctttggtccattttccg
aggagctacaagctatggaaagcataccttagcatgcgcacatactatgtcctggggaaa
gcaacgaaacaaaagcgatcgggtgcacggaaaaaatacgctacaatgcaagagatgatc
gaggaggacgaatttgacgccgagtcctgggaaggtgggctgaatggtgttgttggctgg
gaagagtggaaggcacttgtgggtgtctatgagcgtgcattgatgtggcttccaacgatg
cctcgcttatggctcaactacctaaccatattcaaccacccctgcctcccacctgggttt
tccaaaactcacgttcgaagaacttacgaccgcgcgcttagaacgctccctccatcactc
cacaaccgtatctggccgcggtacctcatatgggccgaacgtacgggcgggccaaccacc
gtggctgtcttcaggcggtacattgccgtagacccgtcgatgacagaacactacaccaaa
ctgctaatcgaaatgaagcgccccttggaggctgccaagctccttttgggacttgcacgg
aaagcagcgaggggagagtacgagagtccagagggcaaaagtccataccagctgctcggg
gaatggctcgatgttgtggaagcttgggccgaagacgtcggtcttgaccccgatgaaatc
aaaccagcggaagaaccctccaagaaagaggaagaaaaggtcgaaccggtttcatccact
gggacgttgatacgtttggcaggacctatgataccagcagacggctctggaaaaccagca
gaaacacgactatacgatccagacgaagatcccacaaacacccaaaaacttgacattgag
aagatcattcacaaagatggtctggaaatgtacaaagaccaagctgggagactctggact
ggattggcgacatattggatcaagaggggtgaattcgatcgggctacggaaactttcgaa
aagggcatggccagtgttctcactattcgagactttacacagatctttgatgcatacgct
gaattctgcgaaacactcatttctgcattgatggacgagctggcttcccctgaagacgac
gaagatacagccgaaaccgaagcagaactcgatacccgcatgcgcgcgtttgaaaaactc
atggacaggcggccgttcctcgtaaacgatgtcctcctacgacgcaatccaaacgacata
caagaatgggagaagagagtggcgctctggggtgcagatgacgagaaggtggcagaaacg
tacaccacagctctcaagaccatcaaccctaagaaaacaaccgccaacgcacaccaactc
tatgtcaactttgcgaaattctacgaatcgggcggggtcgaggggcagaaccccaaggac
ctcgagtcggcccggcgggttttggaaaaggcgaccaaagtggagttcaagcatgtggac
gaattggcagaggtctggatcgaatggagtgatatggagattcgaaacgagaactttgat
gaagcgatacgcgttatgcagcgtgccacggccataccgaaaaacgtgaagatcaactat
catgatcagtcattaccagtacaagcacgccttttcaaatcgctcaagctctggtcgtgc
tatgtagatttggaagaagcgatagggaccgtagagagcacgaaagcggtgtacgacaag
atgttggaattgaagattgctaatgctcaagtgattgtgaattatgcaagctttttagag
gacaacaactactttgaagatagtttcaaggtttacgaacgaggagtcgagctattcacc
ttcccaattgcctttgaactttggaatatttacttggccaagttcatcaagcgatatggt
ggctcaaaactcgaacgtgcgcgagacctgttcgaacaagcgctcgaaaaatgtccagaa
aagcattgcaagcccttgttccttatgtatgcccagctggaagaggaatacggactggcg
aaacgtgcgatggatatatacgatcgtgcgacgcgggtcgttctcgatcaggacaagttc
gatatgttcacaatctacatcgcaaaagcctcttctctctacggcctcccggcaacgcgc
ccgatctacgaacgagcactccaagtcctcccaaacaaacaaaccgccgaactctgtctc
cgtttcgcccagctcgagcgcaaactcggcgaaatcgaccgcgcgcgagcaatctatgcg
cacgcctcgcaattctgcgaccctcgcacgagcaccgagttttggaaagcgtggaacacg
ttcgagatcgagaccgggtcggaggatacgtttagggagatgctcaggattaagaggagc
gtgcaggcgcagtataacaccgaggtctctttcttggctgctcaggcccaaggagcgaag
aaggctgcgctggagaaggagctggcgaccgccaagacggacgcgatggctcaggttgaa
gccaagactgcgccatcgttcgttgctggtaaaaaggatgtgcctgcgaatgggcaagag
aacggagaagggaatgcggatgagatccagattgacgatgaggagttttga
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integrated database retrieval system
