KEGG T09256: RhiXN

Rhizoctonia solani: RhiXN_03999

Entry

RhiXN_03999       CDS       T09256

Name

(RefSeq) 5'-3' exoribonuclease

K12619

5'-3' exoribonuclease 2 [EC:3.1.13.-]

Organism

rsx Rhizoctonia solani

Pathway

rsx03008

Ribosome biogenesis in eukaryotes

rsx03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:rsx00001]
09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    RhiXN_03999
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RhiXN_03999
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsx03021]
    RhiXN_03999
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_03999
   03009 Ribosome biogenesis [BR:rsx03009]
    RhiXN_03999
   03016 Transfer RNA biogenesis [BR:rsx03016]
    RhiXN_03999
Transcription machinery [BR:rsx03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     RhiXN_03999
Messenger RNA biogenesis [BR:rsx03019]
Eukaryotic type
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     RhiXN_03999
Ribosome biogenesis [BR:rsx03009]
Eukaryotic type
  Pre-60S particles
   RNases
    RhiXN_03999
Transfer RNA biogenesis [BR:rsx03016]
Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    RhiXN_03999

SSDB

Motif

Pfam:

XRN_M XRN_N zf-CCHC zf-CCHC_2 eIF3g

Other DBs

NCBI-GeneID:

67026279

NCBI-ProteinID:

XP_043176235

UniProt:

A0A8H8NPG4

LinkDB

Position

1:join(1562852..1562854,1562901..1562949,1562998..1563134,1563280..1563486,1563659..1564539,1564604..1564684,1564734..1564791,1564847..1564940,1564988..1565286,1565350..1565934)

AA seq 797 aa
MGVPALFRWLSKKYPKIVSQVVEEEPTRVPDADGNLVELPMDTSTPNPNGFELDCLYLDM
NGIDADLIMLALATHEPHFRVLREDVFADSNKNSCRICGQEGHFAAQCTGKPKEKDTSKP
PEKKPFIFLDVAIWKDELPRMGGYLAEHGQANKANVQIMLEGLAKREDEIFRKRREGPHK
TIYIYPVQGELNINYDVAEERQEQNAKRRKVEQQRAKEREQDAQLVEVTQSSSAPSGPHG
LPSRPTFDVFTGSSLPNNPTFGGSNSEVVANRAALRLANLSAADAMRAELAGATPLKPSS
RATPVSKLTISAPVEQVPTPEQAADSKPEPEAPVAASEGPEETGEPDESVNPQPMDTDIV
DGAVEALITSAVDRAVEPEGPRGIKRSVEEIEKDETDTPAEDEEPTVKKALKVNPDGTVE
QEDTIKLWEPGYKERYYRSKFGAELNDTELRKQITTSYMEGLCWVLQYYYQGAPSWTWFY
PYHFAPFAADFEDVEHMDIKFNLASRVHIPTPFQSLMTDEDSPIIDFYPTEFEIDMNGKK
MSWQGVALLPFIDEKRLLGAMAERYPELSDDEVRRNKWGSNHIYVSDGNDLYDFFCGLYT
KRGPIPLDTRLSRGISGTVLHDPACVPDSSYPSPLTRVGLPDIVANRTLSAQFYYPRQIT
PHRSILLPGARLAPKVLGQADAEHVMRGGESRRGGRGRGGGRGGTPRDAGFVSSTGGYSD
RPGAYERNGSRFSQYDSYNGGYGSGYSGNGGPGGYAGYGGNGGGGGYGGYGGGNGGDGGH
RGGNDGYRGGGGGGEGV

NT seq 2394 nt +upstreamnt +downstreamnt
atgggtgttcccgctcttttcagatggctcagcaagaaatacccgaaaatcgtttctcag
gtagttgaagaagaacccacacgagttccagatgcagacggaaatcttgttgaactgcct
atggatacatccactcccaatcctaatggatttgagttggattgcttgtacctggatatg
aatggcattgatgctgatcttatcatgttggcactcgccactcacgagccacatttccgt
gttcttcgcgaagatgtttttgcggattccaacaaaaacagctgcagaatatgcggccag
gagggacattttgccgcacaatgtacagggaaacctaaggagaaagacacatcaaaaccc
ccagagaagaaaccgtttattttccttgacgtagcgatctggaaagacgaactcccgcgc
atgggtggctatttggctgagcatgggcaggcaaacaaagcgaatgtgcagattatgctc
gagggactggctaaacgagaggatgagattttcaggaaaagacgtgaaggtccgcataaa
actatttacatataccctgtgcagggtgaactaaatatcaactatgatgtagccgaagag
cgtcaggagcagaacgccaaacgacgcaaagtggagcaacaacgtgctaaggagcgggag
caagatgctcaattagtcgaggttactcaatcgtcatccgcccctagtgggccacacgga
ctcccgtcgcgccctacttttgacgtcttcacaggttcctcattacccaataacccaact
tttggcgggtctaacagcgaagtcgtagccaatcgtgctgcactacggcttgctaatctc
agtgcagccgatgctatgcgcgctgagctggcaggagccacccctctcaaaccctctagt
cgtgccactccagtcagtaagctgaccatctccgctcctgtggagcaagtccctacgcct
gagcaagcagccgactccaaacctgagcctgaggctccagtggcagcatcggagggtcct
gaagagaccggtgagcctgatgaatcggttaaccctcaaccgatggacacggatatagtt
gatggcgctgtggaagccctcatcacaagtgctgttgaccgtgctgttgaacctgaggga
ccgcgaggtatcaagcgctcagtggaagagatagaaaaggatgaaaccgatacccccgcc
gaggacgaagagccaactgtcaagaaggcccttaaggtgaacccagacggtactgtcgag
caggaagatactattaaactttgggaaccaggttacaaagagaggtattatcggtctaag
tttggggccgagctcaacgacaccgagctgcggaaacaaatcactacctcatacatggaa
gggctttgctgggtgctgcaatattactaccaaggagcaccgtcctggacttggttctat
ccctaccattttgcgccattcgccgccgacttcgaggatgtagaacatatggacataaag
ttcaaccttgccagtcgtgtccatatccctacaccattccaatcactcatgacggacgag
gactcgcccattattgacttttatcccacggaattcgagattgacatgaacgggaagaag
atgtcgtggcaaggagttgcgctgctcccctttatcgacgagaagagactccttggtgca
atggctgaaaggtaccccgagctcagcgatgacgaagttcgtagaaacaagtgggggtcc
aaccatatatacgtttccgatgggaacgacctatacgatttcttctgtggactctatacc
aaacgggggcccattccactagacactcgtctcagtcgcggcatatccggcacagtctta
cacgatcccgcatgcgtacccgactcatcatatccatcccctcttacccgagttggcctg
ccagacatagttgccaatcgcactttgtcggctcaattctactacccccggcaaatcacc
ccgcaccgctctatacttcttcccggagcacgattggcccccaaagtcctcggacaagca
gacgccgaacacgttatgcgtgggggagaatcgcgacgcggaggcagaggtagaggaggc
ggccgaggtggaactccacgagacgccggatttgtcagctccacaggaggatacagtgat
aggcctggtgcttacgagcgcaatggttctagattctctcagtacgatagttataacggt
ggatacgggagcggatactctgggaacggtggtcctggaggttatgcaggctacggtgga
aacggaggaggtggaggctatggtggctatggtggaggaaacggaggtgacggagggcat
cgaggaggcaatgacggctataggggtggaggtggcggaggagagggggtataa

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