KEGG   Rhizoctonia solani: RhiXN_04054
Entry
RhiXN_04054       CDS       T09256                                 
Name
(RefSeq) U5 snRNP complex subunit
  KO
K12857  Prp8 binding protein
Organism
rsx  Rhizoctonia solani
Pathway
rsx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    RhiXN_04054
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsx03041]
    RhiXN_04054
Spliceosome [BR:rsx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    RhiXN_04054
 Complex C
   U5 SnRNP specific factors
    RhiXN_04054
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_EML NBCH_WD40 Beta-prop_SCAP Beta-prop_EIPR1 WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_RIG_1st Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N eIF2A WD40_like PEP5_VPS11_N Beta-prop_DCAF4 TibC_1st WDR54 PQQ Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 67026334
NCBI-ProteinID: XP_043176290
LinkDB
Position
1:join(1720125..1720325,1720380..1720452,1720504..1720907,1720964..1721342,1721413..1721477)
AA seq 373 aa
MADKRKAPSPPPSSAALVKRARGETPPPMTQIAISAGASDREKALVRNVQRTSGLDAPIV
SLAGAHSAEIMSCRFDPTGQNIAACSADRTISFWRTYPPNTNYGHLGPTSPIHKGPILDL
QWSLNSPHIYTVSADGTLAFINVTTGERIRRLRAHRGVVNALDRALTGGTELIATAGDDG
FVRVWDVEEEGRDAVQEWEIGCPVTAVCWSADASQLFAGALDNEIHVYDLRKKQEVYTLK
GHTDTIASLALSPNGQFLLSPSFSSTTLIHDVRPFATDASRVHRILQGAPAGFENTLRRA
AWSRDDGGQRVAVGGADKTVTVWDFESGRVLYKLPGHKGTVTAVDFHPREPIILTGSKDA
TLLLGELERSLAL
NT seq 1122 nt   +upstreamnt  +downstreamnt
atggcagacaaacgaaaagcgccgtcgcctccaccttcgtcagcggcccttgtcaaacgg
gcgcgtggagaaacaccgccgccaatgacccagatcgccatctcggctggggcaagcgat
cgagaaaaggcgctggtgaggaacgttcagcgaaccagtggacttgatgctccaattgtc
agcttagcaggggcccactctgcagaaattatgagctgtcgatttgatcctactggtcaa
aacatcgcagcgtgctcagcagacaggacaatatcattttggcggacgtatcctccaaac
acgaactatggtcatctcggccccacatctcccattcacaaaggaccaatactcgatttg
cagtggtctttgaattcaccccacatctacacagtctcggcggacggcacgcttgcgttt
ataaacgttactactggagagcgaattcggcgtctacgagctcaccgtggcgtcgtcaat
gcactcgaccgggccttgactggaggcaccgagttaatcgctactgctggcgatgatgga
tttgttcgcgtgtgggacgtagaagaagagggtcgtgatgcagtgcaagaatgggagatt
gggtgtcccgttacggccgtatgttggagcgcagacgcatctcaattatttgcgggcgca
ttagacaatgaaattcacgtatacgacttgcgcaaaaaacaagaagtatatacgctcaag
ggacacaccgacactatcgcttcattagcactttcaccaaatggccaattcttattgtca
ccatcgttttcttcgactacactcatccatgacgtgcgtccttttgcgaccgatgcttct
cgagtacaccggatattgcaaggcgctccagccggtttcgaaaacacgctcaggcgtgca
gcgtggagccgcgacgacggcgggcagcgcgtagcagtgggcggtgcggataaaaccgtc
acagtctgggattttgaaagtgggcgtgtactctataagcttcctggtcacaagggaact
gtcaccgccgtcgacttccaccctcgggaacctataattttaacgggtagcaaagacgct
acgttgcttctgggtgaactcgaacgttctttggccctgtaa

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