KEGG   Rhizoctonia solani: RhiXN_04101
Entry
RhiXN_04101       CDS       T09256                                 
Name
(RefSeq) mRNA cleavage and polyadenylation factor CLP1
  KO
K15363  fanconi-associated nuclease 1 [EC:3.1.21.- 3.1.4.1]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    RhiXN_04101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsx03400]
    RhiXN_04101
Enzymes [BR:rsx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.1  phosphodiesterase I
     RhiXN_04101
DNA repair and recombination proteins [BR:rsx03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     RhiXN_04101
SSDB
Motif
Pfam: CLP1_P VRR_NUC Clp1 CLP1_N FAN1_TPR FAN1_HTH Rho_N
Other DBs
NCBI-GeneID: 67026381
NCBI-ProteinID: XP_043176337
LinkDB
Position
1:complement(join(1858605..1859639,1859691..1859855,1859907..1860216,1860272..1860644,1860697..1860942,1860995..1861329,1861386..1862127,1862180..1862266,1862319..1862508,1862853..1862913,1862976..1863162,1863215..1863419,1863476..1863582,1863633..1863740,1863793..1864039,1864094..1864352,1864477..1864529,1864584..1864694))
AA seq 1606 aa
MSETVKSTNVSDYRNWDLIAKSEYRFELEANTSLAIRLTSGTAEVYGAELAPGRSPSTEY
TSDETPMVPLINIHTAFEQMRILAYRALTANQPETAKSRPPRVLVLGPENSGKTSACKIW
CNYAIRGRSWCPTLVNLDVSDGGWTIPGTVSACPLSSAIPTCTPANPFGATATSAPTALS
SSALLPVVHWFGHSDAKRNQQLIEKLIRTLADGVKQKFQQDHTLNASGLIIDTPAAFSTS
NAQGDSKYNLIKTCVEVFDVNTILVMGHDKLSVELQRVFGGSSGINVLKVPKSGGVVELD
YAYQTRVIASQIRAYFYGTPLYLPPSMNPATAQLGGEATTETTLSPFSITLNASDLQIYR
IGSTVLVPSSALPIGATRAIGEIQPVRVDVESGGILHSVLALLAPFDSPPSDQMLLQQEV
NGFLIVTAIDIPRRKITVLAPSQVSLDGDFDPLVKSEEKDASYHLLGTTDNDGERTIQAH
RSESDNRGNNTVDSSQTEVSKSMYVTKLLEMIDTVLEHESHLFNSSEIAILNGIKHANYF
QQYLISRLVQRKRGKWLRFDQLKESYASEFCKFVVEAEVPRTMADTLLDLSGYFHSKDSP
PILSAQTDVIDLTLDSDDEDTCAPTLNTSGNPASGDGASALTTRVEPPPESVVFLEDTSA
ATPAQLLECLNIEELKLMGKRLKIPSKSKSTRDDLVKAILHSTSTQTTLPFATARKTSNP
TLKRHANDWQALFPFKPPQVSGKVQNLPLQERRVREMCRELYGACFRLLEHVIQTLHLVS
VVYFRSTEQSEANSIMLSAILSLAGKRNYPIYEYKRTADVFPARSDLLRYMEISLLLNEV
ENILAGAGQPQGAKFDRLKASQDVVDIWGSHSDRWNLLVAYLKDKSHRERGLERFEEGYL
LTRLAYKAAECFGALKRYDMEAKLLAALLRQTRWRRSKRGRWYDRMALIYTKYMGGGEAN
LRQARDYLQIGLKDELVFIGSRPMLLRRLKRLEKQLRLPLDEQYVCEDDLKVAVEVQIEG
SRVYTPQTSTSPSKNPESPPKISPSPMDKAIMMHFSGSPSSSLPITNNNQRSKWTGKSIW
AGKEGEVNVETLALEYYAGLGFRGFHSEGAIVSTLFGFLFWDILFAPIPGAFETPYQSAP
LDLVHDSFFSSREELINTRLGELKNTASAARRIVQTVYSRERDREPWCIGVRWDLFEHEN
DLLEIVECLGGPALAAICRLLAEEYGSRRGGVPDLFVWNSAEKTCKFVEVKGPGDNLSET
QKVWIDVLLGAGVNVELCRVYEYGKIPPRTVRNKNKTKEVSKRRPTSHKQSPEESKPAAE
ENDHKSNYDSEEMDEIQSSSEDQAGTNTGRDSTAHQDQDDITHIDRPSDPAVLSNICGPS
LDKSSSSLVEPPKLLDEGEDTIYQTHHAHTTLLRPITSIPAPLLPTGSNKSNLENLCSTI
AGVAKRARTLVQETVILEKPQTAQHQSSARDTTLSPALEPGPIQILESHRSHHSDTTLEV
RIEPQFMERPMSSPQKRPMSSNKESQNVPKGTPAKKKVKEEEVSPSSHFSTASTPTPKRK
YKRSMTHTPARRVVSTSAMADTTKSVPRTTTTRIKLLELFENEGVR
NT seq 4821 nt   +upstreamnt  +downstreamnt
atgtctgaaactgttaaatccaccaatgtctctgactatcgaaactgggacctaattgct
aagtcggaatatagatttgagctagaggcaaacacgtcactcgctattaggttgacttct
ggaactgctgaagtctatggggccgaacttgcacccggaagatcaccttctacagagtat
acttctgacgaaactcctatggtaccattaatcaatatccatacggcattcgagcagatg
cgaatactcgcgtaccgtgctctaacagcgaatcagccagaaactgccaaatcacgtcct
cctcgagtactcgtgcttggtcctgaaaattcaggaaaaactagtgcttgtaaaatatgg
tgcaattacgcgattagagggcgcagttggtgcccgacgcttgttaatcttgacgttagc
gatggaggttggacaatacctggaacagtctccgcatgtccactgtcctctgcaattcct
acttgtacacccgcaaacccgtttggggcgaccgccacatctgctccaaccgcgttgagt
tcttcggccttactcccggtggtgcactggttcggccattcagatgcgaaacgtaaccag
caacttatcgaaaaactaatccgcaccctggcagacggcgtcaagcagaagtttcaacaa
gaccacaccttgaatgcatcaggattgattattgatactccagccgcattttctacttct
aacgctcagggagatagcaaatacaacttgatcaaaacatgcgtagaggtctttgacgtc
aatacgattcttgtgatgggccacgacaaactcagtgttgaacttcagagggtctttgga
ggttctagtggcatcaatgtgttaaaggtgccaaaatcaggcggcgtggttgagctggat
tatgcatatcagacgagggtgatagcgtcgcaaatccgtgcatacttctatggaactcct
ctgtaccttcctccttctatgaatcctgcgactgctcaacttggaggggaagcgacaacg
gaaacgacactgtcacccttctcaataactttgaatgcaagtgatcttcaaatatatagg
atcggaagtactgtgcttgtgccgagttcagcgttgcccattggtgcgacaagggctata
ggtgaaattcaacctgtacgagtcgatgttgaatctggaggaattcttcacagcgttttg
gcactactagcaccattcgattcaccgccttcggaccaaatgcttcttcagcaagaagtc
aatggattcttgattgtcactgcgattgatatcccccggcgaaagattactgttttagca
ccaagtcaggtgtcattggatggggatttcgatcctttggtcaaatcagaagagaaagac
gcctcataccatctattgggtaccaccgataatgacggtgaacgtacgattcaagcgcac
cgctcagaatccgacaatcgaggtaataataccgttgactcatcacagaccgaagtttcg
aagagcatgtatgtcactaaactacttgagatgattgacaccgtcttggaacacgaatct
catctattcaactcttctgaaattgcaattctaaacggtattaagcacgccaactacttc
caacagtatctcatttcacgcttggttcaacggaaacgaggcaaatggcttcgcttcgat
caactgaaggaaagctatgcttcggaattttgcaagtttgtggttgaggctgaggtacct
agaaccatggccgatactctcttagacctttcaggctacttccactcaaaagactctcct
cctattttatccgctcaaacggatgtgatcgaccttacactggacagcgatgacgaggac
acttgcgctccaactctcaacacatccggtaaccccgcctcgggtgatggcgcttcggct
ctgactactcgtgtcgaaccgccgcctgagtcagttgtttttctggaagatactagtgcg
gctactcctgctcaactactcgaatgtctgaatattgaagagttgaaacttatggggaaa
cggttgaagattccttcaaagtctaaatcaactcgtgatgatttggtaaaggctatcctg
cactcgacctccacgcaaactacgttgccattcgctaccgctagaaaaacttccaatccc
accttaaaaaggcatgctaacgattggcaagcattgttcccatttaaacctccccaagtt
tctggaaaagtacaaaacttacctcttcaagaacgccgagtacgagagatgtgtagagaa
ctctatggtgcatgcttcagactcctggaacatgttatccagacattacacttagtgagt
gtggtctatttccgaagcactgagcaatccgaagctaattcgattatgctttcagctatt
ttatcgctagcaggaaaacgcaattaccctatatacgagtataaacgaacagcagatgtt
tttccagcacgtagcgacttactaagatacatggagatatctctacttttgaacgaagtc
gagaacatacttgctggagctggccaacctcaaggagcgaagtttgaccgactgaaagcc
tctcaagatgttgtcgacatctggggctctcattcggatagatggaacctgttggttgcg
tacttaaaagataaatcacaccgtgagaggggtctagagaggtttgaagaaggctatctc
ttgactcgactagcctataaggccgcagaatgctttggagcgctgaaaaggtacgatatg
gaggccaaacttcttgcagcgttgcttcgccaaaccaggtggaggcgaagcaaacgaggt
cgttggtacgaccgaatggccctcatttataccaaatatatgggtgggggagaggcaaac
cttcgccaagcacgagactatttacaaatagggctcaaggacgaactagtattcataggc
agtcgccctatgctactacgccgcctgaaaaggctagaaaagcaacttcgtttgcccctg
gacgagcagtatgtgtgtgaggatgatctcaaggtggctgtagaagtccaaattgaaggc
agtagagtatacaccccacaaacatcaacttcaccatccaagaatcccgaaagtccaccc
aaaatctccccatccccaatggataaagctattatgatgcattttagtggctccccctca
tcgtcactacccataactaataataaccaacggtccaagtggacgggtaaatcaatatgg
gccggcaaagagggcgaggtaaacgtagaaacccttgccctcgaatactatgcaggcctc
ggctttagagggtttcattcagaaggtgctattgtgtcgacgttatttggtttcctcttt
tgggacattctgtttgcacccatcccaggagcgtttgagacaccttatcaatccgcgcct
ctggatctcgtacacgattcttttttcagctcgcgggaagagcttatcaatactagactt
ggagaattaaagaacacagctagcgcagcgcgtcggatcgtccaaactgtttattcccgc
gaaagggatcgtgagccatggtgtattggggtgcgatgggatctgttcgagcacgaaaat
gatttactcgaaatcgtcgagtgcctaggaggccctgccttggctgctatatgccgccta
ctcgctgaagagtatggttctcgaaggggtggtgttcccgacctttttgtttggaactct
gccgagaagacatgcaaatttgtcgaagtcaaaggccctggtgacaacctttccgaaaca
caaaaagtttggatcgatgtactactgggcgcgggcgtcaatgtcgagctatgtcgcgtg
tacgagtacggcaaaatacctccacgtactgttcggaataagaacaaaacgaaggaagtt
tctaagcggcgtccgacgagccacaaacaaagccccgaggagtccaaacccgcagctgaa
gagaatgatcataaatctaattacgattcggaggaaatggacgaaatacagagctcgagt
gaagatcaggcgggcacgaacacaggcagagactctactgcccatcaggatcaggatgac
attacacacatagaccgaccttcggatccggccgtcctctcaaacatttgtggcccttcc
ttggataaatcctcatcatcccttgtcgaaccccctaaactattggacgaaggtgaagat
acaatttatcaaacacaccatgcacatacaactctgcttcggcccattacttctatacca
gccccgctgcttccgacgggttcaaataaatcaaacttagagaatctctgttcgacaatt
gctggtgttgccaagcgcgctcgaacgttggtccaagagacggtgatactggagaagccc
caaaccgcccaacaccagtcttcggctagagacactactctgagtcccgcattggagccc
ggaccgattcaaattttggagtcacatcgatcacaccattcagacaccactctcgaagtc
cgaatagagcctcagtttatggaacgtccgatgtccagccctcaaaagagacctatgtca
agcaacaaagaatctcaaaatgtacccaaaggtaccccagctaagaagaaggtcaaagag
gaagaagtcagcccgagcagccatttttcaacagcaagcacacctacaccgaaacgaaag
tacaaacgatcaatgacgcatacacctgcacggagggtagtgtcgacttcggctatggct
gatacaacaaagagcgtgcctcggacgacgacgacgcggataaaactactcgaactcttc
gaaaacgaaggcgtacgatga

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