KEGG   Rhizoctonia solani: RhiXN_04255
Entry
RhiXN_04255       CDS       T09256                                 
Name
(RefSeq) exosome complex exonuclease DIS3/RRP44
  KO
K18748  protein SSD1
Organism
rsx  Rhizoctonia solani
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_04255
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Factors involved in mRNA localization
    Other mRNA localization factors
     RhiXN_04255
SSDB
Motif
Pfam: RNB Dis3l2_C_term OB_Dis3 Rrp44_CSD1 Rrp44_S1 DUF5774
Other DBs
NCBI-GeneID: 67026535
NCBI-ProteinID: XP_043176491
UniProt: A0A8H8SS59
LinkDB
Position
1:join(2298948..2300213,2300267..2300729,2300778..2301007,2301059..2301471,2301525..2301870,2301915..2302072,2302122..2302496,2302549..2302672,2302726..2302875,2302930..2303031,2303081..2303372,2303426..2303489,2303546..2303744,2303795..2303948,2303990..2304255,2305208..2305375)
AA seq 1589 aa
MADSATPATAQAPSASTNNNANANANEKKPNGGNRNNNNNNNRQKRGPNRQPSVSNGPNG
GTPKDNTNNSGNNSNANANSGGKSQPRSQRKPSTNLGASPAPVPQVAAVASDGSRPPSTD
GTKKTDNRRNNNNGQRRDSQSGGRGQGNNRRGSSRQASQSRQQSGDQVKASPSTENPTPG
SNPATDQAQRLLERAITDMKSTAQQNSAAAPAAPQQQSVAQGSTLGLNAPVFQPGASVYP
TPGAPTDLPPRHRKSASTGSHSSPGSFNSSSFTSPLQGFSPNLHSMREDVAEEGEIEENN
QYSAQQQAQFQQRNAQPPVGTFSAPRFAALAQQQQQTQLTQEEPEVLGPTGRPQLAPTFQ
FGRRRNTNTGNAPAIQEEDLGFQFPQQQHYQPEAQQSQSIASAQAQAHRRTGSEVTGMLA
EQMALQAQIEALQQQQQQLLQQQIATGSVMSTFGSSNLGAGRPMQNHRRIQSQQIPVGGG
MGNFGGNLQGGPMGNFGNVNLNGGLGLGMPPEQNPNAPRGHGRRHSVNVINKSPGGGETL
GQFNYSYDQDGYGDGFAPAPSGHNRQASRSDASWRINGGAGAIGSSFGQGTAELAQAQAQ
LQSLQQFRAAAGGHHQKMPSFSFPNMLPNMMAANMMSFGGGLNVLQQQQQQFQMQLQQQS
NQPQRKSLFAPYLPQASLPPLLAAGKLVVGILRVNKRNRSDAYVSTEVLDADIYICGSKD
RNRALEGDIVAVELLDVDEVWGTKKEKEEKKRKKEENAAYDVRGAIGRKNDKKKDDVEVE
GQGLMLFEDEEVTDEVKPQFAGHVVAVVERMPGQLFSGTLGLLRPSSAATKEKQEAERRE
REGDRYDEQAAKKEMERPKIVWFKPTDKRVPLIAIPTEQAPPDFVTNSEAYADKLFVACI
KRHASIPISSLHPFGTLVEELGPIGDVEVETSALLKDCNFPTEEFTENVIKCLPPLPWTI
PEREYETRRDFRNERVFTIDPTTAKDMDDALHVQVNDDGTYDIGVHITDVSYFVKPNTAL
DRDARKRATSVYLVQRAVPMLPPTLSEELCSLVPGKERLTFSAVFTMTQDARVIKKWFGR
SIIKSAAKLSYSEAQGVIDGGNLASKNVDPQHSANAIEGDIKILHNLAKQMRERRIENGT
LSIQSLRLKFDLDESGAPVDCSDELQTEANHLIAEFMILANTAVAQQIAVHLPEQALLRR
HEEPIERRLAGFKERAARLGYEVDTSSAGALQRSFNAVQDPTARRLLEILCSKAMHRAKY
FCTGMLDIAKYSHYALAEPLYTHFTSPIRRYADILVHRQLESVIGPASDVKFTMDRDSVA
KVAQQCNIKKDSAKLAQEQSAHLFLCLLISDLTQRYGPVVRQARVVGVLDAAFDVLIPEF
GIEKRVHVDQMPIDNHVFEEHTHTLQIYWSNRDVISWLAENSDDEHLKKVKQTAEQHAVK
MELTSQDEIVINRPAPPVDAAEETSKQRKLSKAKVEPQFEGLRRTPAGHRIQDIRELMSV
PVIVTADLTKSPRLSRYTALTLTLRPPQLPRNKSAKALRQDATTWLAAEPGGKMEVETEL
ERTWRTTQAEIVEAVGFDVATGRREGSGT
NT seq 4770 nt   +upstreamnt  +downstreamnt
atggccgattcagctacgcccgccacggcgcaagcgccctctgcatctacgaacaataac
gcaaacgcaaacgcgaacgagaagaaacccaatggtggaaaccggaataataacaataac
aacaaccgccaaaaacgtggacccaatcgtcagccctcggtcagcaatggtcccaatgga
ggcacccctaaggacaatacgaataattctgggaacaattcgaacgccaacgcgaactct
ggtggcaagtcccagcctcgttcccagaggaaaccctctacaaatctcggcgcttccccg
gcgcctgtgccacaagttgctgcagtcgcgtccgacggatcgcgtcctccttcgaccgat
ggtaccaagaagaccgacaatcgccgcaataacaacaatggccagcgccgtgacagccaa
tctggtggccgaggccagggtaacaatcgtcgtgggtccagtcgccaggctagccagagt
cgccagcagtccggtgaccaggtcaaggcatctccctctaccgagaatcccacacccggt
tcgaatcctgctaccgaccaggcacagcgcctcttggaacgagcgatcaccgatatgaag
tcaactgctcaacagaactcggcagccgcaccggccgcgccccagcagcagtccgttgct
caagggtcgactctcggactcaatgcccccgttttccaacccggcgcatcggtttaccct
actcctggcgctcccaccgatctcccacctcgtcatcgcaagtccgcatccaccggaagc
cattccagccctggttcattcaactcttcgtcgttcacatcccctctacagggtttctcg
cccaatcttcattctatgcgtgaggatgtcgccgaggaaggcgaaattgaagagaacaac
cagtattcggcacaacagcaggcacagttccagcagaggaacgcacagccacctgtgggc
accttttctgcccctcgttttgctgcgcttgctcaacagcaacaacagactcaactaacc
caggaggagcccgaagtccttgggcccactggccgcccgcagctcgcgccgaccttccaa
ttcggtaggcgtcgtaatactaacaccggcaatgctcctgcgatccaagaggaagatctt
ggtttccaattcccgcagcaacagcattatcaacctgaagctcagcagtcgcagtcaatt
gcatcagcacaagcacaggctcaccgtcgcactggaagcgaggtcaccggtatgctcgct
gaacaaatggctctacaagctcagatcgaggctcttcagcagcagcaacagcaattactg
cagcaacagattgctactggtagtgtgatgtccacctttggctcttccaatcttggcgcc
ggccggcctatgcagaatcatcgccgcatccaaagtcagcagatccctgtcggaggcggt
atgggtaactttgggggcaacttgcaaggcggtccaatgggcaactttggtaacgtcaac
ctcaatggcggactcggccttggtatgcctcctgaacaaaaccctaacgctcctcgtggg
catggtcgtcgccacagcgttaacgttatcaataagtctcctggtgggggagagacactt
ggtcaattcaattactcgtacgaccaagatggctatggtgacggcttcgcacccgctcct
agcggtcacaatcgccaagcttctcgctctgacgctagctggcgtatcaatggaggcgcc
ggtgctatcgggagcagttttgggcagggtaccgccgaactcgctcaagctcaggcccaa
ctccagagtcttcagcagttccgtgccgcagccggtggtcaccaccagaagatgccttca
ttcagcttccccaatatgttgccaaacatgatggccgcaaatatgatgagttttggcggt
gggttgaatgtcctgcagcaacagcaacaacaattccagatgcaactccagcaacaatcg
aaccagcctcagcgcaagtccctcttcgccccttaccttccccaagcttcccttcctcct
ttgcttgcagctggaaagcttgttgttggcattcttcgcgtcaacaagcgcaaccgctcc
gatgcctacgtgtccaccgaggtgcttgatgcagacatttatatctgcggttccaaagat
cgcaatcgtgcactcgaaggtgacattgttgctgttgagctactagacgtcgatgaagtc
tggggcaccaagaaggagaaggaagagaagaaacgtaagaaggaggagaatgctgcctat
gatgtccgtggtgcgatcgggcgcaagaacgacaagaagaaggacgatgttgaggtcgaa
ggccaaggactgatgctgtttgaggatgaggaggtgaccgatgaggtcaagccccagttt
gctggacacgtcgttgccgttgttgagcgtatgcccggccaactcttttctggcaccctc
ggacttttgcgtccatcttctgcggcgaccaaggagaagcaggaagccgagcgccgcgag
cgcgagggtgatcgttatgatgaacaggccgcgaagaaagagatggaacgccccaagatc
gtctggttcaagcctactgacaagcgtgttcctctcatcgccatcccgaccgagcaggca
ccccccgactttgttaccaattctgaggcctacgctgacaagctatttgtcgcatgcatc
aaacgccacgcaagtatacccattagctctcttcatccgttcggcacgctcgtcgaggag
cttggtccgattggagatgtcgaggtcgaaaccagcgcccttcttaaggactgcaatttc
ccgactgaagaattcactgagaatgtcatcaaatgtttgccccctcttccatggaccatc
cccgaacgagaatacgagacccgtcgtgacttccgtaacgagcgtgtctttactattgat
cccaccacagccaaggacatggacgacgcgttgcacgttcaggttaacgacgacggtact
tacgacattggtgttcatattaccgatgtctcttacttcgtcaagccgaacactgcactc
gatcgggatgctcgcaaacgtgctacaagtgtttatttggttcaacgtgctgtaccgatg
cttcctcctactctgagcgaggaattgtgcagtcttgtccccggaaaagagcgcttgacc
ttctctgctgtgtttaccatgacgcaagatgcacgagtaatcaagaagtggtttgggcgc
tcaattatcaaatccgctgcgaagctgtcctattctgaggctcagggagtaatagacggt
ggcaatctcgctagcaagaacgttgacccgcagcatagcgcgaatgctatcgagggggat
attaagattctccataatctcgccaagcagatgcgtgagcgccgtattgagaatggcaca
cttagcattcagtccttgaggctcaagttcgatctcgatgaatctggtgcacccgtcgac
tgcagtgacgaattgcaaacagaggccaaccaccttattgcagaatttatgatcctggcc
aatactgccgttgctcagcaaattgctgttcacctgccagagcaagcacttctccgccgt
cacgaggagcctatcgagcgtcgtctggctggattcaaggagcgtgctgcgcgtctcgga
tatgaagtcgatacttcatctgctggtgctttacaaagatcgttcaacgctgtccaagat
cctaccgctcgtcgtctcctcgagatcctctgttccaaggccatgcatcgtgccaagtac
ttctgcacgggtatgcttgatattgccaaatacagccactatgcgctcgcggagccgctg
tacacccatttcacctcccctatccgtcgttacgcggacattcttgtgcacaggcaattg
gagagtgtgattggccctgcctctgacgtcaagttcaccatggatcgcgattcggttgcc
aaggttgctcagcagtgtaatatcaaaaaggactctgctaaactggcccaagaacaatct
gctcatcttttcctatgcttacttatttccgacctgacccaaaggtacggacctgtggtt
cgccaggctcgtgtagttggggttctcgacgccgcattcgacgttcttatcccagagttc
ggcatcgagaagcgtgtccatgtcgatcagatgcctattgacaaccatgtctttgaggag
catacgcacactcttcagatttactggtcgaatcgtgatgtgatctcttggttggctgag
aacagcgacgacgagcatctcaagaaggtcaagcagactgccgagcaacacgcggttaag
atggagctcacctcacaagacgagattgtcattaaccgtcctgcgcctcctgttgacgct
gctgaagaaacttcgaaacagcgcaagttgtccaaggccaaagttgaaccccagtttgag
ggtctgcgccgcactcctgctggtcaccggatccaggatattcgcgagctcatgagtgtc
cccgtcattgtgactgccgacctcaccaagagcccccggttatcaaggtatacagcgtta
acccttacgctgaggccgccccaactcccaagaaataagtcggcaaaagctctgcgccag
gatgccacgacttggttggcggcagagcctggtggaaagatggaagtagagacggagctg
gagcgcacatggcgtacgacacaggcagagatcgttgaagctgttgggttcgatgttgcg
actggaagaagagagggaagtgggacctag

DBGET integrated database retrieval system