KEGG   Rhizoctonia solani: RhiXN_04475
Entry
RhiXN_04475       CDS       T09256                                 
Name
(RefSeq) damaged DNA binding protein
  KO
K07466  replication factor A1
Organism
rsx  Rhizoctonia solani
Pathway
rsx03030  DNA replication
rsx03420  Nucleotide excision repair
rsx03430  Mismatch repair
rsx03440  Homologous recombination
rsx03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RhiXN_04475
   03420 Nucleotide excision repair
    RhiXN_04475
   03430 Mismatch repair
    RhiXN_04475
   03440 Homologous recombination
    RhiXN_04475
   03460 Fanconi anemia pathway
    RhiXN_04475
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rsx03000]
    RhiXN_04475
   03032 DNA replication proteins [BR:rsx03032]
    RhiXN_04475
   03400 DNA repair and recombination proteins [BR:rsx03400]
    RhiXN_04475
Transcription factors [BR:rsx03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    RhiXN_04475
DNA replication proteins [BR:rsx03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    RhiXN_04475
DNA repair and recombination proteins [BR:rsx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     RhiXN_04475
   MMR (mismatch excision repair)
     RhiXN_04475
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     RhiXN_04475
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 CAP_GLY tRNA_anti-codon LRR_4 LRR_9 LRR_8 POT1 DUF223 LRR_At5g56370 LRR_NXF1-5 LRR_14 SHLD2_OB1 Rep-A_N HROB DUF1570
Other DBs
NCBI-GeneID: 67026755
NCBI-ProteinID: XP_043176711
LinkDB
Position
1:join(2884308..2884483,2884536..2884819,2884868..2884967,2885019..2885115,2885172..2885362,2885416..2885621,2885685..2885758,2885809..2885929,2885978..2886040,2886093..2886338,2886614..2886707,2886956..2887385,2887435..2887539,2887590..2887677,2887734..2887943,2887993..2888386,2888437..2888551,2888600..2888692,2888744..2888842)
AA seq 1061 aa
MDDLSIGQRIRIGEDYGTVLFIGDVAGTTGTWLGVEWDEGSKRGKHSGDRNGVQYFTCCI
PNSGSFVRPNTPGLTVGISFDSALTSKYIDTFQSDGVESVVLGSSNGAILVEGPRLNKVR
AKFSQIERLRSISLNKYDVSNVGDPQAVTRLCQSVQSLDLSRTLLGNWDAVADIIRCIPN
LSTLELNNNRIRYTTALNTANFPKLTHLRLNSTMITWAQACEVLVYLPELEDLQLGYNQL
ENLEPSSRINTSEGLPCLNTLNLDFNRLSDWVSIMAACSMVPQLHNLMIPSNIIATIPRR
TVTSVAGGPTLAIYYLTISDNPISRWRDVDALVTWLPELRELGISLEPLASGVPPGATRN
FVVARLPALVKLNGTEITERERTDAELFYLSWIGRNEQSSEADTEALHPRWKELATKYNA
STEKPKPIVDNLGSHMISIKVVKIQGNITKQQPVSISDTSTILRVLPTMSIKAFGMKLKK
AMKLSSSVDPKALWILSSSESGATIPLRPFDTDPLHDLTEFTPDAIGDFQPVLQLLSIKK
VSSGGSSDRYRLIITLGIEKVDDYSEKIGNPVNFDKAENQAGAGPSAMDVDPAPAAPAPA
PPKAVPSGPTSGPATNTLPAGFAPLHPIEALSPYSNKWTIRARVTQKSDIRTWSNQRGEG
KLFSVNLMDETGEIRATGFNEVVDNLYSKLEEGKVYWFSKARVQLAKKQFSNLSNDYEIA
LERQTEAIPCEDESAVPKVQFNFTELSQLDGVEKDAMVDVLGVVTEVKPIETINVKSTGK
TVSKRDVTVVDKSGSSVRMTIWGKQAETFQAENNPVIAFKGVKVGDFGGRTLSLVSSSTM
TFHPDFPEAHALQGWYSSEGHSQTFKSQSTGGMGAGGGGVGTINRREMKTLQAVKEENLG
MGEEGKTDFFTTRATIIHIKSDNIMYPACGSDNCSKKVTEVHDGWRCEKCEKTFPKPNYR
YIMSLSVADYTQTAWLQVFNDPGELILGMTASELHELKEENEASYTTAIEKATSQTWMFQ
CRAQQSTYQDQSRVRYGVNRAHKIDYAQESRALLEAIKGYD
NT seq 3186 nt   +upstreamnt  +downstreamnt
atggatgatctaagtatcggtcagaggatacgcattggcgaggactacggcactgtttta
ttcatcggagatgttgctggaacaactgggacctggcttggagtagagtgggatgaagga
tccaagagagggaagcacagcggagaccgaaatggcgttcaatacttcacatgttgcata
cctaattctggttcatttgtgaggccaaatactcctgggttaaccgtcggtatcagcttt
gattctgcgctaacatcaaagtacattgatacatttcaatccgatggtgtggagtccgtc
gtgcttggatcaagcaacggtgcaattcttgttgaaggaccacgtctgaacaaggttcga
gccaaattctctcagattgaacgccttcgaagtatcagcctcaacaaatacgatgtctca
aatgtaggagacccccaggctgttacaaggctatgtcaatccgttcaaagccttgatctc
tcgaggactctgttgggaaattgggacgctgttgcggacatcattcgatgcataccaaat
ctctcaaccctagagttgaacaacaaccgaattcggtatactactgctttaaacaccgcc
aatttccccaagctcacccatctacgtctgaattcaacaatgattacttgggcacaggct
tgtgaggtcctcgtatatctccctgaacttgaagaccttcaacttggatacaaccaatta
gaaaaccttgagccatcatcaagaatcaatacttcggaaggtcttccatgtttaaacacg
ttgaatctggatttcaaccgcttgagcgactgggtttcaatcatggcggcatgtagtatg
gtaccccaattgcacaacctcatgataccctccaacatcattgctactattcctcgtcgc
actgtcacatcggtagctggagggcctacacttgcgatctattatcttactatctctgat
aatccgatctctaggtggagggatgtggatgctctagtaacttggttgcctgaactacgt
gagctgggtatctccttggaaccactagcctctggtgttcctccgggagctactcgcaat
tttgttgttgcaaggctaccggccttggtaaagctgaacggaacagagattaccgaaaga
gagcggactgatgcagaactcttctacctatcttggatagggaggaatgagcaatcgtct
gaggcggacacagaagccttacaccctcgttggaaagaattggcaaccaagtacaacgca
tcgactgagaaaccgaaaccaattgttgataatttgggaagtcatatgattagtatcaaa
gtagttaagatccaaggcaatatcacaaaacagcagcccgtctccatctcggatacgagc
acgattttaagagtgttaccaacgatgagcatcaaagcatttgggatgaaattgaaaaag
gcgatgaagctctcatcgtcagttgaccctaaagcactatggattctttctagttcagag
tccggcgcgacaattcctctgcgtccctttgatactgatccgctacatgatctgactgag
tttactccggatgcgataggcgattttcaaccagtcctccagctactttcgatcaagaag
gttagctcgggtggcagcagtgaccgctacagactaattatcacactcggaatagagaag
gtggatgattattctgagaaaatcggcaaccctgtcaacttcgacaaggccgagaaccaa
gctggcgccggaccttcggcaatggatgtagatccggcaccggctgcacctgcacctgca
cctcccaaggccgtgccgtcggggcctacctctggtcctgccacgaacacgctacccgcc
ggctttgctccccttcatcccatcgaagccttgagcccatattcaaacaaatggacaatt
cgagcacgcgtcacccagaaatcagatatccgtacttggtccaatcagcgcggagaaggg
aaacttttcagtgtcaatttgatggatgagactggggagattcgtgcaacaggattcaac
gaggttgtggataacttgtactcgaaactcgaggaaggaaaggtctattggttctccaaa
gcacgcgttcagttggccaaaaaacagttctccaatctttcaaacgactacgagattgct
cttgaaaggcaaaccgaagctatcccctgtgaggacgaaagtgctgttcctaaagttcaa
tttaactttacggagctttcacaattggatggcgtcgaaaaagatgctatggttgatgtc
cttggcgttgtgactgaggtcaagcctatcgaaactatcaacgttaagtcaacaggaaaa
acagtatcgaaacgcgatgtcactgttgtagacaagtcaggcagtagcgtgcgaatgact
atctgggggaagcaagcggagacgttccaggcagagaataacccagtcattgcattcaag
ggagttaaagtaggcgattttggcggccgcacactctcactggtcagttctagcaccatg
accttccaccccgactttcccgaagcgcacgccttacaagggtggtattcgtccgagggg
cattctcaaacttttaagtcgcaatccacaggtggtatgggagctggcggcgggggtgtt
ggaacaatcaaccggcgcgagatgaagactctccaagcggtcaaagaagagaatcttgga
atgggtgaagaaggcaaaactgacttcttcactactcgcgcaaccatcatccatatcaaa
agcgacaatatcatgtatccggcgtgtggctcggataattgcagtaagaaagtcactgag
gttcatgatggatggcgctgcgaaaaatgcgagaagacattccccaagcctaattaccga
tacatcatgagcctttcggttgcagactacacccagactgcgtggctacaggtcttcaac
gaccccggagaacttatcttgggcatgaccgcgtccgaacttcatgagctcaaagaagag
aacgaagcttcgtatactacagcgatcgagaaagcaaccagtcaaacctggatgttccaa
tgcagggctcaacagagtacataccaagaccaatcgcgagtccggtacggtgtcaaccgt
gctcacaagatcgactatgcccaagaaagccgtgcattgctagaagccattaaaggctat
gactaa

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