Rhizoctonia solani: RhiXN_04589
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Entry
RhiXN_04589 CDS
T09256
Name
(RefSeq) gag-polypeptide of LTR copia-type
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
rsx
Rhizoctonia solani
Pathway
rsx03013
Nucleocytoplasmic transport
rsx03015
mRNA surveillance pathway
rsx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
RhiXN_04589
09122 Translation
03013 Nucleocytoplasmic transport
RhiXN_04589
03015 mRNA surveillance pathway
RhiXN_04589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_04589
03041 Spliceosome [BR:
rsx03041
]
RhiXN_04589
03009 Ribosome biogenesis [BR:
rsx03009
]
RhiXN_04589
03012 Translation factors [BR:
rsx03012
]
RhiXN_04589
Enzymes [BR:
rsx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RhiXN_04589
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
RhiXN_04589
mRNA cycle factors
Stress granule specific factors
RhiXN_04589
Spliceosome [BR:
rsx03041
]
Complex C
Other components
EJC/TREX
RhiXN_04589
Ribosome biogenesis [BR:
rsx03009
]
Eukaryotic type
90S particles
Helicases
RhiXN_04589
Translation factors [BR:
rsx03012
]
Eukaryotic type
Initiation factors
eIF-4
RhiXN_04589
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Retrotran_gag_2
DEAD
Retrotran_gag_3
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
67026869
NCBI-ProteinID:
XP_043176825
UniProt:
A0A8H8SU00
LinkDB
All DBs
Position
1:complement(join(3246619..3246654,3246705..3246773,3246850..3246925,3246977..3247194,3247248..3247292,3247345..3247736,3247796..3248045,3248107..3248216,3248274..3249195))
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AA seq
705 aa
AA seq
DB search
MSQPVNLDELDASSMRGNNNPAPRSSQNKSQILEATMRNVPKLKEQNYTQWNNMITNSIK
KAKLWGYIDGSIQEPSDYDSNNIATYYDEAAAVRNAILGSLESGAQKYIEDALDPRDAWL
ALEKKYLTAEAEVDAELVDIEKQITNLRPEEDDDMIEHIAKFCRMRCRLNGTRFALDDQA
CITMLYCSLPSSYRQSVLTPEGTEMKDFGALCARLSNLSQNPEPEAPIDEPTPPPVNYTS
WGVPEDIKAFGLTGDKNPLLTERAAVTCRDCLLKGHKVGTPECPQYEWRRELWGAEVDKD
LSNTSELESNSQAKRPVLVGTKRLSYEFSEPVKVVLGFNELGLKLMSRIEPSAIQQCAIL
PVINGRNVLAQAPPKNGKTTALALSILHVVDHALRHIQAIVFTSTNEKATAFQSVISRSG
LSSLCYSYPDPCGDARLSLGLINRNIVNMRRIRTIALDDLDKLVEAGAQEQILEVYRHVP
SLAQVVASTTTLSPSIANVATKLQADPLRIVVNCDVGPSIGSHFFVKVPANQKPNVLGAC
FRILGASGLMVLCCDFDEIAKYEWSNEYQNYYWREAAGISERESVKSNFIDKLSAIHRRK
NPGYYAYGNRIYDPVSYTTLVANSAILSTTDLSNIDTPLINYDLPKDVCDYVDQLGQWRV
TDSRRSHMIINFVSANTEEINIIHELAEDYGIQIAELLWDGIKLH
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagcctgtaaatttagacgaactcgatgcttcatccatgcgcggcaataacaat
cctgcgcctcgctcctctcaaaacaagtctcagatactcgaagctacgatgcgaaatgtt
cctaagctcaaagagcagaattacactcagtggaataacatgataacaaactcgattaaa
aaagcgaagctttggggatatattgatggatcaatccaggagccctctgattatgattct
aacaacatagccacatattacgacgaagctgcggccgttcggaatgcgatcctagggtcc
ttagagtctggagcacagaaatacatagaggacgcattggatccgagagatgcgtggctt
gcgctagagaagaagtatctgactgctgaggcagaggtcgacgctgaactggtcgatatc
gagaaacaaattacaaacctaaggccggaggaagatgatgatatgatcgagcatattgcc
aagttttgtcgtatgcgatgccgcctaaacggtactcgttttgcgctcgacgaccaggca
tgcatcactatgttatattgctctctaccctcaagttatcgccagtctgtattaacccca
gaaggtacagaaatgaaggactttggcgctctgtgtgctcggttgagtaacctgagccag
aacccggagcctgaggcccctattgatgagcccactccgcctcctgtgaattatacgagt
tggggagtcccggaagacattaaggcatttggactaactggcgacaaaaacccgttgctt
accgaaagggctgcggtgacctgccgggattgcttattgaagggccataaagtgggaacg
cctgagtgccctcaatacgagtggcgtagggagctgtggggtgccgaggttgacaaagac
ttatcaaataccagtgaactggagagtaactctcaagccaaacgccccgtcctagttggc
actaagcgactgagctacgagttttcagaaccggttaaagttgttttgggtttcaatgaa
cttggattgaagctgatgagtaggatagagccctcggcaattcagcaatgcgcgatcctc
cctgttatcaatggccgcaacgtgcttgcccaagcacctccaaagaacggaaaaaccact
gctctggcactatcaatcctacatgttgtcgatcacgctcttcgacacatacaggcgatt
gtttttacttcaaccaacgaaaaggccaccgcttttcaatcagtgatcagcagatcggga
ctttcatcactgtgctattcgtacccagatccttgtggggacgccagattatctttggga
cttattaaccgaaacatcgtgaacatgcgtagaatcagaactatagcattggatgatctc
gacaagctcgtagaagcaggagcccaagaacaaatccttgaagtataccgacacgttccg
tctcttgcacaggtggtcgcttcaacaactacgctttcaccatctattgcaaacgtagct
accaaattacaggcagaccctttacgcatcgtggtcaactgcgatgttgggccgtcaatc
gggagtcactttttcgtcaaagttcccgcgaaccagaagccgaatgtacttggtgcatgt
tttcgaattttgggagcaagtggattaatggttttgtgttgtgattttgacgagatagct
aaatatgaatggagcaacgagtaccaaaactattattggagagaggcggcgggaataagc
gagcgtgaaagtgtaaaaagcaactttatcgataagctgagcgccatacacaggagaaaa
aaccccggctattatgcatatggtaatcgtatatacgatccagtatcatatactaccttg
gtcgccaatagcgcaattttgtccacgaccgatttgtcgaacattgacactcctctcatc
aactacgaccttcctaaagatgtttgcgattatgttgaccagcttggtcaatggcgtgta
actgattcgcggcgaagtcatatgattatcaattttgtttcagccaatacagaagaaata
aacataattcatgagcttgcggaggattatggtattcagattgccgagttactatgggat
ggaattaagcttcattag
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