Rhizoctonia solani: RhiXN_04901
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Entry
RhiXN_04901 CDS
T09256
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
rsx
Rhizoctonia solani
Pathway
rsx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
RhiXN_04901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsx03041
]
RhiXN_04901
Spliceosome [BR:
rsx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
RhiXN_04901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
PRP4
WD40_MABP1-WDR62_2nd
Beta-prop_EML
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Nbas_N
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_WDR75_2nd
Ge1_WD40
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
RMC1_N
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_EIPR1
Motif
Other DBs
NCBI-GeneID:
67027180
NCBI-ProteinID:
XP_043177136
UniProt:
A0A8H8SST0
LinkDB
All DBs
Position
2:join(919005..919016,919065..919086,919136..919314,919377..919491,919538..919643,919691..919772,919825..920002,920052..920157,920212..920451,920665..921154)
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AA seq
509 aa
AA seq
DB search
MADSGLTLENLVDDRNYALGGSDRVRAENKALLDELDRKKRARTMAVPTDDSRVKARLRE
IGEPITLFGERAADRRDRLIYVLSQIRAARGGDDDIEMEDESSSSDEEAKRRGVLHGRFT
GASRGSQKNSRIFITQVTTTPRLYRVAQQREESRLPLGKIIDTRKRVFGEVKKFATYGSQ
IGDERPISQVRFSPNGKLLATGSWSGNVKLWNVPACDLAKPYRGGKAFAEKCGVAWHPQA
TLSQSADAINLATGGADLEVSLWSLNSDKALHTLKGHADRVCRVAFHPSGQYLASASYDG
SWRLWDASTGQNTSSYVSDRQLLFQEGHSKEVYAVQFQDDGALVASGYQIATGSGDNTIR
IWDMRSLRALYTIGAHTSIVSDVSFYRPLATGDIFTDIARSSSSTDVKIEDGEDGSKMEE
DKPAITDEIMDDRIPSKSVGNLHLPIPGLFLVSSGYDGMVKVWSADDWQLVKAMSADAGK
VMSADISSDGQFIASGSWNRSYQLFSMEN
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagcggactgacgttggaaaaccttgtcgatgacagaaattacgcgctgggg
gggtccgaccgcgtgagggcagaaaacaaagctcttctcgatgagcttgacagaaaaaaa
cgagcgaggactatggcagttcccacagacgatagtcgtgtcaaggccaggttgcgtgag
attggagaacctatcaccctctttggagaacgcgctgcagatcgtcgtgaccgcttgatt
tacgtgttgtctcagattcgtgctgcccgagggggagacgatgatattgagatggaggat
gaatcaagctccagcgatgaggaggcaaaaagaagaggagttctacacggaaggttcact
ggagcttctagaggctcgcagaaaaatagccgaatattcattacccaggtcactaccact
cccagactttaccgagttgcccagcagcgagaagaaagtcgtcttccactcgggaaaatt
atagatactcgtaaacgagtgttcggtgaggttaagaaatttgctacctatgggtcgcaa
attggggatgagcgtccgatatctcaggttcgcttttctcccaacgggaaattactggcc
actggaagttggtcgggaaatgtcaagttgtggaatgttcctgcttgcgatctcgcaaag
ccctatcgaggtgggaaagcatttgccgaaaagtgtggtgttgcttggcacccacaagcc
acgctatctcagagcgcggatgctataaatctagccacaggtggggcggatttagaagtc
agcttatggtcactaaatagtgacaaagcccttcatactctcaaaggtcacgcagatcga
gtttgccgggtggcatttcatccctctggccaatatctggctagcgcgagttatgatgga
tcctggcgattgtgggacgcttctaccggtcaaaatactagctcgtatgtttcagacaga
cagttgttattccaggaaggccattccaaggaggtttacgctgtacagtttcaggatgac
ggtgcattagtggcctctggttaccaaattgctacgggctccggagataatacgattcgt
atttgggacatgcgttctttgcgtgcactttatactatcggcgcacatacttcgattgtt
tctgacgtatcgttctatcggcccttggcgacaggagatatatttaccgacattgcgcgt
agtagtagctccactgatgtcaaaatagaggacggggaagatggatccaagatggaagag
gataagcctgcaataacagacgaaattatggacgataggatcccttcaaagtctgtgggt
aaccttcatttacccatccccggattattcttggttagttcgggctatgatgggatggtc
aaggtatggagcgcagatgactggcagcttgtcaaagctatgtccgcagacgctggcaaa
gtcatgtctgcagacatctcatctgatggccaatttattgccagtggctcgtggaatcgt
tcataccaactgttctccatggagaattaa
DBGET
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