KEGG   Rhizoctonia solani: RhiXN_05023
Entry
RhiXN_05023       CDS       T09256                                 
Name
(RefSeq) U6 snRNA-associated-like-Sm protein LSm7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
rsx  Rhizoctonia solani
Pathway
rsx03018  RNA degradation
rsx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    RhiXN_05023
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RhiXN_05023
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_05023
   03041 Spliceosome [BR:rsx03041]
    RhiXN_05023
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     RhiXN_05023
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     RhiXN_05023
Spliceosome [BR:rsx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    RhiXN_05023
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 67027302
NCBI-ProteinID: XP_043177258
LinkDB
Position
2:complement(join(1332059..1332091,1332149..1332234,1332286..1332357,1332418..1332580,1332732..1332938))
AA seq 186 aa
MPRVPGSHLPISSPGATADPCLPIPAVPVNATKMYRTPYWKFELASGPGYRTLSLLIRYS
DVRFEPCPPARGTFRGRGAPRGGSASRGGAPPGSADKPRREAILDLSKYQDERIRVKFTG
GRQVTGVLKGYDQLLNLVLDDVQEERQEPTPHTRALGLAVLRGPTITILSPVDGSEEIEN
PFAQQG
NT seq 561 nt   +upstreamnt  +downstreamnt
atgcccagggtgcctggatcacaccttcctatttcaagtcccggggcaactgcagatcca
tgccttcctataccggctgttccggtgaacgcaactaaaatgtatcgtactccatactgg
aaattcgaattggcgtctggccctggttatcgcacactctctttacttatcaggtactct
gacgtcaggttcgagccttgcccgccggcgcgcggaacattccgtggaagaggtgcacct
cgcggtggctcagcatctcgtggtggtgcccccccaggatcagcagacaaacctcgccgc
gaagctatcctcgacttgagcaaatatcaagacgaacgcattcgtgtgaaattcaccgga
ggccgtcaagtcaccggcgtgctcaagggctatgatcagctactcaacctcgtgttagac
gacgtacaggaggagaggcaggaacctacaccacatacacgtgcgctcggcctcgccgtc
ttgcgtggtcccactatcacaatccttagcccagtggacggatccgaggaaatcgaaaac
ccattcgcgcaacaaggatga

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