KEGG   Rhizoctonia solani: RhiXN_05296
Entry
RhiXN_05296       CDS       T09256                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
rsx  Rhizoctonia solani
Pathway
rsx03020  RNA polymerase
rsx03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RhiXN_05296
  09124 Replication and repair
   03420 Nucleotide excision repair
    RhiXN_05296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsx03021]
    RhiXN_05296
   03400 DNA repair and recombination proteins [BR:rsx03400]
    RhiXN_05296
Transcription machinery [BR:rsx03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     RhiXN_05296
DNA repair and recombination proteins [BR:rsx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      RhiXN_05296
SSDB
Motif
Pfam: RNA_pol_Rpb4 Dicer_dsRBD AbiEi_3
Other DBs
NCBI-GeneID: 67027575
NCBI-ProteinID: XP_043177531
LinkDB
Position
2:join(2142800..2142866,2142927..2143008,2143074..2143151,2143236..2143334,2143452..2143527)
AA seq 133 aa
MATRTRRTQNEEEDAAALKLGSEFNNAGCLLISEVKYLLEHREKDSPDTAVYNKTLDYVK
TFTKFNTNESSSAVREVLRREPNLTQFETAQIANLCPADVEEARNIIPSLVKIDEDRLQT
LLDEVQALRRFQT
NT seq 402 nt   +upstreamnt  +downstreamnt
atggccacccgcacccgccgtacgcaaaacgaagaagaggatgctgctgctttgaaactc
gggtccgaattcaacaatgcgggctgtcttctcatttccgaggtaaaatacctgcttgaa
catagggaaaaggattctcccgatacggcggtgtataataaaacactcgattatgtcaag
acgtttaccaagttcaataccaacgagtcgtcgagtgctgttcgagaggtactgcgccga
gaacccaacctgacgcaattcgagactgcgcagattgcgaatctgtgtccggcagatgtg
gaagaggcgaggaatattattccgagtctggtcaagattgacgaagaccgacttcagacg
ctcttggatgaagtccaggcgctgcgcaggttccagacatga

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