Rhizoctonia solani: RhiXN_05687
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Entry
RhiXN_05687 CDS
T09256
Name
(RefSeq) Transposon Ty3-I Gag-Pol polyprotein
Organism
rsx
Rhizoctonia solani
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RT_RNaseH
RVT_1
RT_RNaseH_2
Integrase_H2C2
zf-H2C2
VID27
Motif
Other DBs
NCBI-GeneID:
67027966
NCBI-ProteinID:
XP_043180935
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Position
6:complement(join(702232..702783,702840..707057))
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AA seq
1589 aa
AA seq
DB search
MAELRNMLRSEAMSVCKPQDGNTPLPPFRAINHQIPLVDEQRTYRFRPSRCPKALKGQFE
SKAREYLGLGRWKHSTGSNAIPMLFIPKKKDGSIELRTVLDKREQNANTVKMASPLPLPK
DILAKVSRHKYQTLLDGKDAYEQIWVVPEDVHKTLFHTPMGTMVSHVMQQGDCNAGATYQ
ALMNHIFAPYIGVFMFVYLDNIVIFSDTIEEHVKHICTILGVLKRKRLFLSPSKMQFFAE
ELRILGHIVDKKGIRMDLHKVDSVSKWKTPESKEQLASFLGAVGYLAPNCPGIRIPMAPL
AKRASGNTPFRWGGTEERAFRDTIKLVEEFRDRHCVALKYGKNESPIYLITDASLTGASG
LVSQGKEWQTAQVAAFWSAKFTTAQQNYSVTDREALAVVCSLDKFGPLLHGVEFTILSDH
KALEYLQTQKDLNPRQIRMSEKLSQFNCTIKYIEGSKNVLADALSQMYSEDRKGTERAES
EFVPDYEEEDSIRDARARNQSVTRPVVTRMAAKVASESQTTSAGVRRNPERKRMAPVCYD
PEIPGRAGQGTRAPRNRGSKRVKEDWNPDIRDEFVGEQNAERDLRETEPNEREETSPASV
ELEGGSQADNKRDKWDPLDRSDHQQITTLVKELDVNEAIANGYQSDKDYARIVNEPSRFA
QFKLRNNLLYFTEHGRTYLCVPDTTVGEWHIRTLLISHAHLIVSHLGYKKTYAYMRESLY
WKNMAKDVEKFCAACVSCASSKKSTQKPYGLLKPLPVPKYPWAQIGVDFLGPLTESATLL
GKFDMVCVVIDHLTCMAHLIPTRLDYTARDMAEVFHANVFRLHGVPKIIISNRDKLFTSI
FWKTLYELLGTELRLSLAFHPQTDGQTERLIRTILALIRVCINPALRDWATKLPSIEFAV
NSARLETTGFSPFALNYGRTPRPILVRTNTDMYGVRNAARNIKYALMIAHNTIIGLRISQ
MVEANRHRRPSPFKTDDLVYVSTKNMRVPLGKPHKLLAQWIGPVRIDGVVKEGATYHVEL
PDDLKRRGIKPIFHALLLKPHVPYEDCCFPGRNYKQIASLEANDDEWAVERIGGHRGKGN
NAMFEIVWQSGDRTWESYRVVRHLEALRQYFEALGISRTKELPWKEDGEVPYDELSDSGS
ETLECASVRVLKEAIWEPQPVISTISHCLRLDPLLSHLTLSTKCTTAGEDAAVATENDGG
MHHQRTTQDPTNKSMQAYYGCSTQWPRPASKPLGQETPHSPKGEGKDGSGGQTWPGPCMS
GEVRWTCTKVLLASVPMGHCVHNQESGLTKGHLQEDALNGNALDLMLGIAADHLPEARRP
PGLARDPPYKEEVPQPSTDEERKWEENERVPDPVPTTLPDPVERGPANHPRRPATEPTQA
GTIGRQVNELARKVSLAILLVENVISGVGHHGRHVPYRALSTKDRRQTQDRGRKLPPGAD
QEGVSHAPDARVDGEGDQRPHTGDRGALGDGQGEQGNFETLRTVEAPESSIGEDEDKPSP
GSDAGAEPAIVGDRDDPDVRNATDHVAKWTNLGPDIEMRDADKGLKTIKPEQPCISPRKL
ELKRSSTRRGSDQNDGKGGERTDGGKGRK
NT seq
4770 nt
NT seq
+upstream
nt +downstream
nt
atggcggaactacgtaacatgctcagaagtgaggcgatgagcgtgtgcaaacctcaggac
ggaaatacgcccctgccgccgttccgagcaataaaccaccaaatacctctggtggatgag
cagagaacgtaccgctttagaccctcgagatgtcccaaagcgcttaaaggacaatttgag
tcaaaggcgagggaatacttgggattgggacgttggaagcatagtactggctcaaacgcg
ataccgatgctattcatacccaagaagaaagacggaagtatcgagctacgtaccgtgtta
gacaaacgtgaacaaaatgcaaatacggtgaaaatggcatcaccattgccgttacccaaa
gatatccttgccaaagtcagtaggcataagtatcaaacgctactggacgggaaggacgct
tacgagcaaatttgggtggtacccgaagacgtgcataagacgttgttccacacgcctatg
gggactatggttagtcacgtaatgcagcaaggggactgtaacgcgggcgcgacataccaa
gcgctgatgaaccatatttttgcgccgtatataggagtatttatgtttgtgtacctagac
aacatagtgatattctcagatacaatagaagaacacgttaaacatatttgtaccatattg
ggggtgctcaagcgcaagagactcttcctgagtccgagtaagatgcagttcttcgcagaa
gaattgcgtatactggggcatatagtcgacaagaaggggatcagaatggacctgcataaa
gtcgactcggtgtccaagtggaagacgcctgaatcaaaagaacaattagctagcttttta
ggtgcggttggatacctagcaccaaactgtccaggtattcgcataccaatggcgccgttg
gctaagagagcgagtggcaacacaccattcagatggggaggcaccgaggaacgtgccttc
cgtgacacgattaaactggtggaagaattccgtgatagacattgcgtggcgctcaaatac
ggcaagaacgagtcacccatatacctaattacagacgctagcttgacaggggcgagcgga
ctagtaagccaaggcaaagagtggcaaacggcgcaagtagccgcgttctggtccgccaag
ttcaccacagctcaacagaactactcagtcacggaccgggaagcgttagctgtggtgtgt
tcattggataaatttggaccgttactacatggggtagagtttacaatactcagcgatcac
aaggcactggagtacctacagactcagaaggatcttaacccgcgacaaatacgaatgtca
gagaaactgagtcagttcaattgcacaattaaatacattgagggatcaaaaaacgtcctt
gcggacgccctatcgcaaatgtatagtgaggataggaaaggcacagagcgtgcggagagc
gagtttgtaccagactacgaggaggaagacagcatacgggacgcacgcgcgcgtaaccaa
tcagtgacccgaccagtagtaaccagaatggcggccaaggtggcgagtgagagccagacc
acgtcggcaggtgtcagacgaaacccggagcgcaagagaatggcaccggtttgttacgac
ccagaaataccgggaagagcggggcaagggaccagggcaccgcgtaaccggggaagcaag
cgcgtgaaagaagattggaaccccgacatacgtgatgaatttgtcggggaacaaaatgcg
gaaagagatctgagagaaactgaacccaacgaaagagaagagacctcaccagcaagcgtt
gagctggagggcgggagtcaggcagacaacaaacgggacaagtgggacccgttggaccgc
tcagatcaccaacagattacaacgctggtaaaagagttagacgtgaatgaggcaatagca
aacggctaccagagtgacaaggattacgcaagaatagtgaatgaaccatcgcgtttcgct
caattcaagctacgcaacaatttactatatttcacagaacacggtaggacgtacctatgc
gtcccagacaccacggttggggaatggcacataaggacattactgatatcacacgcgcac
ttgatagtgtcacacctaggatacaagaagacatacgcatatatgagggaaagtctatat
tggaaaaatatggctaaagacgtggagaaattctgtgcagcatgcgtgtcttgcgcatca
tccaagaagtcgactcagaaaccgtatgggctgctgaaaccattaccggtacccaaatac
ccgtgggcacagattggcgttgatttcctgggaccattaacggaatccgcgaccctactg
ggtaaatttgacatggtatgcgtggtaatcgaccaccttacgtgcatggcgcacttgata
ccaacaaggttggactacacggcccgcgacatggccgaggtatttcacgcgaacgtcttt
aggctgcacggggtacccaagatcatcattagcaatagagacaagttatttacatcaatc
ttctggaagacgctctatgaactattaggtaccgaactgagactgtcgttggcgttccac
ccacagacggacgggcagaccgaaagactcatacgcacgatactggcactgatacgcgtg
tgcataaacccagcgttgagagactgggcaaccaaattacctagtattgagtttgcagta
aactcggctagattggagaccaccgggttcagtccatttgcactgaattacggacgaacc
ccacgtccaatattagtgcgaaccaatactgacatgtacggggtacgcaacgcggcccgc
aacatcaaatacgcactaatgatagcacacaataccatcattggtttgcgaataagtcag
atggtcgaagctaacaggcatagaagaccttcaccgtttaagaccgacgacttagtatat
gttagtaccaagaacatgagagtgccgctggggaaaccacacaagctattggcgcaatgg
atcgggccagtaagaatagacggtgtggtcaaggaaggggccacttaccacgtagagttg
cccgacgacttgaagcgaagaggaataaagccaatattccacgcgttgctactgaaacca
catgtaccatatgaggattgttgcttcccgggaaggaactacaagcagatagcctcctta
gaagccaatgatgatgaatgggcggttgagcggataggcggacatcgcggcaaggggaat
aacgcaatgtttgagatagtatggcaatcgggagaccgtacctgggaatcataccgcgtg
gtacggcaccttgaggccctaagacaatatttcgaagccttagggatcagccgcactaaa
gagctaccgtggaaagaagacggggaagtaccgtacgatgaacttagtgatagtgggtct
gaaacccttgaatgcgcaagcgtaagggtacttaaggaagcaatatgggaaccccaaccg
gtcatcagcaccatatctcactgcctaagactagatcctttattatcacacttgactcta
tctacaaaatgtaccacggccggcgaagacgccgcagtcgcgaccgagaacgacggcggg
atgcaccaccagcgtacgacccaggacccaacaaacaagtcgatgcaggcttactacggc
tgctcaacacagtggcccagaccagcctcgaaaccgttagggcaagaaacgccccactcc
cccaaaggggaaggcaaggacggttcgggaggccaaacatggccaggtccctgcatgtcg
ggagaggtcagatggacctgtacgaaggtattattggcgtcagtaccaatgggccattgc
gtgcacaaccaagagagcggacttaccaagggtcatctacaggaagacgccttaaacggc
aacgcactcgacttaatgctaggaatcgcggccgatcacctaccagaagcacgtcggcct
cctggtctagcgagggatccaccgtacaaggaagaagtacctcaaccgagcacggacgaa
gaacgcaaatgggaagaaaacgagcgcgtacccgatccagtccctacgaccctaccggat
ccggtcgagaggggaccggcgaatcatccaaggagaccagcgacggaaccgacccaggcg
gggacgattggacggcaagtcaacgaactggcaaggaaggtatcgctggcgattctcttg
gtcgagaacgtcatatcaggagtgggacatcatggaagacatgtcccgtatcgcgctttg
agcactaaggatagaagacaaacccaggatcggggacgcaaactacccccaggagctgat
caggagggcgtatcccatgccccagatgccagagtcgacggagagggcgatcaacgacct
catactggggatcgaggagcactgggcgacggtcagggggaacaaggcaactttgagaca
ctacgtactgtcgaggctcccgaatccagcatcggagaggacgaggacaagccctcacct
ggtagcgacgcaggagccgagccggccatcgttggcgaccgagacgacccagatgtccgc
aatgccactgaccacgttgccaagtggaccaaccttgggccagacatcgagatgcgggac
gccgacaagggactcaagaccatcaagcctgaacaaccttgcatctccccaaggaagctt
gaactcaagcgatcttctacgcgtcgaggatctgatcaaaacgacggaaaaggaggagag
cgaaccgacggaggaaagggaaggaagtga
DBGET
integrated database retrieval system
