KEGG   Rhizoctonia solani: RhiXN_05893
Entry
RhiXN_05893       CDS       T09256                                 
Name
(RefSeq) ATP-dependent RNA helicase DOB1
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RhiXN_05893
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_05893
   03041 Spliceosome [BR:rsx03041]
    RhiXN_05893
   03009 Ribosome biogenesis [BR:rsx03009]
    RhiXN_05893
   03016 Transfer RNA biogenesis [BR:rsx03016]
    RhiXN_05893
Enzymes [BR:rsx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     RhiXN_05893
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     RhiXN_05893
Spliceosome [BR:rsx03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    RhiXN_05893
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    RhiXN_05893
Ribosome biogenesis [BR:rsx03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    RhiXN_05893
Transfer RNA biogenesis [BR:rsx03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    RhiXN_05893
SSDB
Motif
Pfam: MTR4_beta-barrel DSHCT DEAD MTR4-like_stalk GRDP-like Helicase_C DEXQc_Suv3 ResIII nSTAND3 Epiplasmin DUF3903
Other DBs
NCBI-GeneID: 67028172
NCBI-ProteinID: XP_043181141
LinkDB
Position
6:complement(join(1467081..1467473,1467528..1467630,1467683..1467726,1467780..1467785,1467839..1468024,1468066..1468132,1468182..1468309,1468360..1468435,1468489..1468583,1468627..1468906,1468955..1469545,1470463..1470635,1470687..1470887,1470936..1471301,1471348..1471728,1471775..1472016,1472066..1472767,1472864..1473169,1473222..1473312,1473361..1473474,1473523..1473777,1473825..1474154))
AA seq 1709 aa
MDDLFSHITGDSGPAMDKGISESKPKRKKRKAGVGEAAPSTEVGGETKPTLQDEEASPAE
PAVKKQKIDAPESVEVDAVEVQAEREVAVSHGLTGQETSEQGGSLKLTHQVRHQVAVPPG
YPYTPIKEHVPPEKPARVYPFTLDPFQQLSVYAIDRNESVLVSAHTSAGKTVVAEYAIAK
CLRDKQRVIYTSPIKALSNQKYREMLAEFGDVGLMTGDVTINPTASCLVMTTEILRSMLY
RGSEIMREVAWVIFDEIHYMRDAERGVVWEETIILLPHTVRYVFLSATIPNAMEFAHWIS
KIHEQPCHVVYTNFRPTPLQHYLFPAGGDGIYLVVNEKSEFREDNFQKAMGKLASMQGED
PADPLGPSDIYKIVKMIIAKNFNPVIVFAFSKRECEALALQMSKLECNSEEEQEMVQNVY
TNAIAALSEEDRKLPQIEHLLPLLKRGIGIHHGGLLPILKEVIEILFQEGLIKVLFATET
FSIGLNMPAKTVVFTDVEKFDGRGVRPLSSGEYIQMSGRAGRRGLDDRGVVIMMVNAKLE
PATAKGMVKGEADRLDSAFHLGYNMVLNLMRVEGVSPEYMLERCFYQYQNGTKVPALESQ
LTELEEKKAELVVPEEESISEYYEIRNQLDELGKDFRTVITHPTYALPFLQPGRLVTVKH
GDQDFGWGVVVNFTQRAAPKNNKSAITAFESLPPQEKYVVDVLLNCAKGSTTTGNTKSTE
ATSSGAFKPCPAGQEGEPLVCPVLLSTIASISHIRVHMSKDLRPVSARETLWKVVTEVKR
RFPKGIALLDPINNMNIKDVKFKELVERIATLERQLEGHALHSDPRLPTLYDAYAQKQDL
SAQIRVLKKTLGAAQDVMQMDELKCRKRVLRRLGFASTDDVVEIKGRVACEISTGDELLL
TEMVFNGVFNSLLPEQCAALLSCFVFTEKSEQATKLKEELAGPLRTLQEIARRIAKVAKE
SKMPVDEEEYVQSFKVELMDAVLQWCRGAKFADICKMTDQFEGSLIRVFRRLQELIRQMT
QAAHAIGNTELEAKFTKASEMLERQNSVIFCSSLLETLMTNSAPPSAYTPSSDLRDEAPP
AFESSSSTPRAFIDSKPPLEPQSSNEVSISATQACASGGQNPEPRPPPALVINGKTTQPY
DLVTVYEVKTHLVFLGAFARLKSEIKSQKGVDVRGSTDELWAIYLARAVDRFAAWLSKGL
PVDLDASNPRLLSEDELPPLDVLMAWHAYLLNPRVYYEDGLTKKSQLLGISGFPFNHLNK
IIDVDTLAALHPSLERQNRFESLTGQPWCCPSNTTIANTMFVPCPRCEKSTLNEVCWITN
EKTGFAEHGFKARCHICMGVFNREDMMVRGLCDDIIKVRIGLTHQSSNPEQKPYISGTLL
DWRTGKPNPEQAMRSNDILLKAFFTPASMKFTRGDWLAGSINYSIKQLETSLKNGLSLKG
GGSQVTRILSYYRCPYYPFSIELCGAIYAMFIQILRQGGFIDKMLGLGWTKPQAFDHDCT
VIHRCIARYHAWLDVMSQLSRKMLVPTLDIDLAWHTHQLKQQSYRIWTLEVLGQFIDHDD
KVEENKLSEAYEQTAKYWEQRWGVPYHVCGCSRPPTHKPFNPGESISRIFRGKGKAVEFS
NSRPQLISTHECDAPTTHPSEHNSMIITGQPLFQSRRNNRALMYAKWDKQMKSYVDKGKV
PPDGWEAMNVQRSAGHGRGFMPPMPDPNL
NT seq 5130 nt   +upstreamnt  +downstreamnt
atggacgacttattttctcatattactggcgatagtggccctgctatggataaggggatt
agcgaatccaagcccaaaaggaaaaagcgaaaagcaggtgtgggtgaagcagcacctagc
acggaggttggtggcgaaacgaaaccgacgttacaagacgaagaggcaagtcctgctgag
ccagccgtcaaaaagcaaaaaatcgacgctccagaatctgtcgaagtggacgctgtcgag
gtacaggcagaacgcgaagtcgcagtcagccatggcttgaccggtcaggagacgtcggaa
caagggggcagtttgaagctcactcaccaggttcgacatcaagtcgctgttcctcctgga
tatccatatacacctattaaggagcatgttcctccagagaaaccagcacgggtctatccc
ttcacattagatccattccagcaactctctgtgtacgctattgaccgaaacgagtctgtg
ctggtttctgcacacactagcgccggcaagacagttgttgccgagtatgcgatcgcaaaa
tgcctgagagacaaacagcgggtgatttacaccagtccaatcaaggcccttagtaatcaa
aagtaccgagaaatgttggccgagttcggagacgttggacttatgacaggggatgtcacc
attaatcccactgcttcatgtttggtcatgaccaccgagattctccgttcaatgctatac
agaggttcggagatcatgcgtgaagttgcctgggttatttttgacgagatccactacatg
cgagatgctgagcgtggcgttgtttgggaggagactattattttactccctcacaccgtt
cgatacgttttcctttcggccacaattcccaacgccatggaattcgctcattggatttct
aaaatacacgaacaaccctgtcatgttgtttacaccaacttccgacccactcccttacaa
cactatctctttcctgctggcggtgatggcatctatcttgtcgtcaacgaaaaaagcgag
tttcgagaagataatttccagaaagcaatgggcaaattggcttcgatgcaaggtgaagac
ccggcagacccactgggcccttcggacatttataagattgtcaagatgattattgccaaa
aacttcaatccagtcattgtgtttgcatttagtaaacgtgaatgcgaagcgctcgctctt
caaatgtctaaactggagtgcaactcggaggaggaacaagagatggtccaaaacgtatac
acaaacgctattgcggcactgtccgaggaagaccgaaagctacctcagattgagcatttg
ctgccgttgctcaagcgtggtatcgggatccatcacggaggtctacttcctatcctcaag
gaagtcatcgaaattctctttcaagaaggactcatcaaggttctttttgcgacggaaaca
ttttcaatcgggttgaacatgccagccaaaacggtcgtctttacagacgtggagaaattc
gatggacggggcgttcgtccgctatcttctggagagtacattcaaatgtccggtcgtgct
ggacgtcgagggttggacgatcgaggagtggtaattatgatggtgaacgccaagctggaa
cccgcgacggccaagggaatggtcaagggcgaggcggatcggctcgactcggctttccat
ttgggatacaatatggttttgaacttgatgcgggtggagggtgtaagccccgagtacatg
cttgagaggtgcttctatcagtaccagaatggcaccaaggttcctgccttggagtctcag
cttacggagttggaggaaaagaaagccgaactggtcgtacctgaggaagaatccattagt
gaatactatgagattcgaaaccaattggacgagcttggaaaggacttccggaccgttatt
acgcatccaacatatgcattgccattcttgcaacctggacgattggtcacagtcaaacat
ggtgaccaagattttgggtggggtgtcgtggttaattttacacagcgagctgctcccaaa
aataacaaatctgcaatcactgcgtttgagtcccttccaccccaagaaaaatacgttgtg
gatgtgctcctcaattgtgccaagggatccacgacgaccggtaataccaaatcgactgaa
gccacctcttcgggggcgtttaagccatgccctgctgggcaggaaggggagccactcgta
tgccccgtgcttttgtcaacgatagcaagcatcagtcacatccgtgttcatatgtcgaaa
gacttgcgtcccgtttctgcacgagagaccctgtggaaagttgttaccgaagtcaagagg
cggttcccaaaggggatcgccctgttagatcctattaataacatgaacatcaaggacgta
aagtttaaggagctggtcgagagaatcgctacgctagagagacagctcgaaggacatgcc
ttacactctgacccccggctgcctacactctacgacgcatatgcgcagaaacaagatctc
agtgctcagattcgggtcctgaaaaagactcttggcgctgcacaggacgtaatgcagatg
gatgagctcaaatgccgaaagcgagtcttgcgccggttagggtttgcgagcactgacgat
gtggtcgagatcaaaggcagggtcgcttgcgagattagcaccggtgatgaactgctcttg
accgagatggtcttcaacggggtattcaacagcctattgccggagcaatgtgccgcacta
ttgagctgcttcgtatttactgaaaagagcgaacaagcgacgaaactcaaagaggaactt
gctggcccgctgagaactttgcaggaaatagcgagaaggatcgccaaggtagcaaaggag
agcaaaatgcctgttgatgaggaggagtatgtacagagcttcaaggtggagctgatggat
gcagtgttgcaatggtgcaggggtgctaaattcgctgatatctgcaagatgacggaccaa
tttgaaggctccctcatccgtgtgttcagacgtttgcaggagctcatccgccaaatgact
caggccgcacacgcgatcggaaacaccgagctcgaggccaagtttacaaaagcgagcgaa
atgctcgagcgccaaaactcagtcatcttctgttcatctctgctcgaaacactcatgaca
aattctgccccaccatcagcatacaccccatcctcagacttaagagatgaggcaccgcca
gcttttgagtccagttcttcaacacctcgggccttcattgattccaagcctccacttgag
ccacagtctagcaacgaagtatcaatatctgccacccaagcttgtgcttcggggggtcaa
aatcctgagcctagacctccaccagcgcttgttatcaatggcaaaacaactcaaccctat
gatctggtcactgtgtacgaagtcaaaactcacctagtctttctgggagcctttgcacgc
ctcaagtcagagataaaatctcagaaaggcgttgatgtccgcggctcgaccgatgagcta
tgggcgatctacttggcccgagccgttgatcggttcgcagcatggctatccaagggcctt
ccagtcgacctggacgcatcaaacccaaggttgctgagcgaggacgaactacctccattg
gatgtgctaatggcttggcacgcatacttgctgaatccaagggtatattatgaagatgga
ctgaccaaaaaatcacaattgctgggtatatcagggtttcctttcaatcatttgaacaag
atcatagatgtcgatacgctagccgccctgcacccatctctcgagaggcagaatcgtttt
gaatctcttactggacaaccgtggtgctgtccatcaaacacgactattgcgaacacaatg
tttgttccttgtccaagatgcgaaaaatccacgctaaatgaagtctgttggatcacaaat
gagaaaactggatttgcagaacacggtttcaaggctcgatgtcatatttgtatgggagta
tttaatcgagaagacatgatggttcgaggtttgtgtgacgatattatcaaagtacggatt
ggtttgactcaccaatcaagtaatccggagcaaaagccctatatctctggcacattgttg
gattggagaactgggaaaccgaaccccgagcaggcaatgcgtagtaatgacattttgctc
aaggccttcttcacaccagcatcgatgaagtttacgcgcggagattggcttgcaggatcg
ataaactattccatcaagcagctagagacctctctcaaaaatgggttaagtttaaaagga
ggaggatcacaggttactcgtattttaagctactaccgatgcccatactatcctttttct
atagagctttgcggcgcgatatacgcgatgttcatccagatccttcgccaaggaggtttc
atcgacaagatgcttggattaggctggacaaagcctcaggcatttgatcatgactgtacc
gtaattcatcgatgcatcgcccgctatcatgcttggctggatgtcatgagccagttaagt
cgaaaaatgcttgttccgacgcttgatattgatcttgcatggcacacccatcagttgaaa
caacagagctaccggatatggactttagaagtcctgggacagttcattgatcatgatgac
aaggtcgaagagaacaagctatcagaggcatacgagcagacagcgaagtattgggaacaa
cgatggggtgtcccttatcatgtctgtggttgctcacgcccaccaacacacaagcctttc
aacccaggcgaatcgatttcacgaatattccggggaaagggcaaggccgtcgaattctcc
aactctcgcccgcagcttatttccacccatgaatgcgatgcgccaactacgcatccttct
gagcataattctatgattatcacgggacagcctttgttccagagtcgccgtaataacaga
gcacttatgtacgccaagtgggacaagcagatgaagtcgtatgtggacaagggcaaagtt
ccgccagatggatgggaagcaatgaatgtgcaacgatctgcaggacatggtcggggattt
atgcctcccatgccagaccctaatctgtaa

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