Rhizoctonia solani: RhiXN_06024
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Entry
RhiXN_06024 CDS
T09256
Name
(RefSeq) nucleoporin NDC1
KO
K14315
nucleoporin NDC1
Organism
rsx
Rhizoctonia solani
Pathway
rsx03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
RhiXN_06024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_06024
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
RhiXN_06024
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Mating_N
Motif
Other DBs
NCBI-GeneID:
67028303
NCBI-ProteinID:
XP_043181272
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All DBs
Position
6:join(1911143..1911226,1911283..1911373,1911422..1911523,1911574..1911739,1911790..1911913,1911964..1912121,1912173..1912317,1912369..1912449,1912501..1912678,1912731..1913117,1913180..1913371,1913429..1913541)
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AA seq
606 aa
AA seq
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MSAVTRTTFPAAQLPAKPTSTSYENACRHILSQRFRQLLHKSATLAAVVVFVSTLNLRGP
ILSSILTNAIHISLAFVFGILPTLVARKIRRRALQTPRPKTLVAEIGSLSLLYLALYAVS
GLVLAECYATFVSLRVQGLKLSLFTGSNRYPWSINERHVMLCWGNTLLGATYAALDGIQH
RNPAWLRRYGGFTQRRSTATWKSVSRSAVLAAYYWPIFTIAYFVCRVPFLLVTNKFLGFV
LSPFLHFMMRGGAFWQLLSFSLFWRMFVLQLTTLVMWDVAGEWFEINASQVIHLSQFKED
PNAVLIAGLQSQDPYYKYFAFAELANVVSTRPPRRVALFSDLKANPTAWEQVCRECLLFL
GKDYTRVIGRSGPASTVTSAPSAPVTSKSSTLSTGPVYKHPTQSTGPIDAFVGAANTVAT
VIPANLSVPAIFLPTPHPTASAPSSVPSITQPWKFNLPNLVDFDKLIGKLPPVWARRVRS
VVRDRKEAVLEGLLEGRAADVWIVEALSTLIAQSLHEDPYGRVQRDIPRVLEAFVSYLGA
LEQLIEEVNADLTPESEDAVRAVVQPVADALREGIRMIVLEFGHRLKAFTFPPRVAKRLQ
TMVDYL
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcggtaacacgaacgacattccctgcagcccagcttcctgccaaacctacgtca
acgtcatacgagaatgcatgtcggcacattctgagtcagcgctttcgtcagctcttgcat
aagtcggctactcttgctgctgtcgttgtgttcgtatctacgctcaacctccgaggcccc
attttatcatcgatactcacaaatgctatacatatttctctggcgtttgtgttcggcata
ttacctacactggttgctcgaaaaattcgccgacgagcccttcaaacgcctcggcccaag
actctcgttgcagaaattgggtctctctcgcttctctatctcgcactatacgccgtttcg
gggcttgtgcttgcagagtgctacgccacgtttgtgagcctgcgtgtccaaggtctcaaa
ctttcactattcaccggctcaaaccggtacccatggagcataaatgaacgacatgtcatg
ctttgctgggggaacactcttttaggagcaacatacgctgcgttggatggaatccagcac
cggaatcccgcgtggttgcgtcgttatggtggtttcacgcaacgtcgtagcacagcaacc
tggaaatcggtttcacgctctgcagtcttggctgcgtactactggccgattttcactatt
gcctatttcgtctgcagagtaccgtttctgcttgttacgaataagtttctaggattcgta
ctgagcccgtttttacactttatgatgcgtggaggagctttctggcaactcttgtcattc
tcgttgttctggcgcatgtttgttttgcaattgacgacacttgtcatgtgggacgtcgcg
ggggagtggttcgaaatcaatgcgagccaagttattcacctttctcaattcaaagaagat
cccaatgctgttcttattgctggactgcaaagtcaagacccatactacaagtactttgca
tttgctgaattggccaatgttgtatccactcgtcctcctcgcagagttgctttgttctca
gatctcaaggccaatcctacggcctgggaacaagtatgccgcgagtgtttattattcctc
ggcaaagattacactagagttattgggagaagtgggccagcgtctacagtaacgtcagct
ccaagcgcaccggtcacatccaaaagctctacattgtccaccggtccagtatataagcat
ccgactcaatcgacgggccccatcgacgcattcgtgggcgccgccaacactgttgccaca
gttatcccagccaacctcagcgtacctgccatctttttgccgaccccccatcctacggcc
tctgccccgtcttcagtaccttcgattacccagccttggaaatttaacttgcccaacctg
gtagatttcgacaagctgattgggaagctgcctcctgtttgggcacgccgggttcgttca
gttgtccgggatcgaaaagaggccgtgcttgaaggcttgttggaaggtcgagctgcagat
gtatggatcgttgaagctctctcgacacttatcgcccagtcactccacgaggacccctat
ggtcgcgttcagcgagacatcccgcgcgttttggaggcatttgtttcttatcttggggcg
ctggagcaattgatcgaagaggtcaatgcagacttgactccagagagcgaagatgctgtg
cgggccgttgtgcaacccgttgcggatgccctaagggaagggatccgtatgatcgtactc
gagtttggacatcgcctaaaagcatttacgttcccgccccgcgtggcgaagcggctacag
accatggtggattatttgtag
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