KEGG   Rhizoctonia solani: RhiXN_07031
Entry
RhiXN_07031       CDS       T09256                                 
Name
(RefSeq) pre-mRNA polyadenylation factor PF I, YSH1-component related protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    RhiXN_07031
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsx03021]
    RhiXN_07031
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_07031
Transcription machinery [BR:rsx03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     RhiXN_07031
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     RhiXN_07031
    U7-dependent histone pre-mRNA processing factors
     RhiXN_07031
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_3
Other DBs
NCBI-GeneID: 67029310
NCBI-ProteinID: XP_043185319
UniProt: A0A8H8P7Q9
LinkDB
Position
13:join(561249..561415,561473..561518,561571..561662,561716..562294,562347..562536,562745..562909,562967..563116,563173..563427,563483..563587,563643..564059,564116..564289)
AA seq 779 aa
MLGAGQEVGRSCCVIKYRGKTVVCDAGVHPAHSGLASLPFVDELDWSTVDAILVTHFHLD
HAASLTYVMEKTNFKEGKGKVYMTHPTKAVYKYIMQDFVRMATAGNESLYTPLDVSLSLS
HIIPISAHQLISPTPGLSFTPYHAGHVLGACMFLIDIAGLQILYTGDYSREEDRHLVRAE
LPPIRPDLLIVESTYGVQGHEARESREARFTSSVHTIVKRGGHVLLPVFALGRAQELLLI
LDEYWAAHPELHGVPVYYASNLARKCMAVYQTYIHTMNSHIRSRFARKDNPFVFKHISHL
PATRGWERKIAEAGPCVILASPGFMSSGPSRELLELWAPDAKNGVIITGYSIEGTMARDI
ILEPDEIKPYRSDGPDGNKMIPRRLSVEYISFSAHVDGPQNTEFIEAVGARHVILVHGEQ
TAMGRLRGSLQARYKDRDEDVKVHAPKNLETLKLSFRGERVAKAIGSLATPLPSVGSTLS
GLLISKDYSYTLLSTKDLRDFTGLSLSTVTQKQRVPLTVGWALVRYHLEGMFGTVKEGQD
EEGLPVLRVMNAVDVKLASEQELVLEWISGSSSDMIADAAVALHAQRTFIDYSTVTSHPH
SHPHSHDPTTTDPEKHSAERLQHVVEFLEAHFGDVEFVDPSQQGDVSMSETADTKTEMEV
ESKPEAGDAKPENVDEETKDLDMDDAEGDQDYKRPNRMPIPLGPHLLVKVDNYEARVSIP
SMAVSCDYDPLRRRVNAVLEMAVATIDTLADSYEVTGQNEVSVQAIREDTKEMMIESSA
NT seq 2340 nt   +upstreamnt  +downstreamnt
atgcttggcgccggtcaagaggtcggtcgttcttgctgtgtaataaagtatcgtggtaaa
actgttgtgtgtgacgcgggtgtgcatcctgcccattcgggtctcgcaagtttaccgttt
gtggacgaattggattggagtactgtagatgcgatattggttactcactttcatttagat
catgcggctagtttgacgtacgtcatggaaaaaacgaattttaaagaaggaaaaggaaag
gtctacatgacacacccgactaaggccgtatacaagtacattatgcaagattttgttcgc
atggctactgccgggaacgaatctctttatactccactggacgtctcactctccctctcg
cacatcatccccatctcggctcaccaactcatctctcccacccctggattgtcctttaca
ccctaccacgcaggtcacgttctaggcgcatgcatgttcctgatcgacattgcaggcctc
caaatcctctacacgggcgactactcccgagaagaagaccgccacctcgtccgcgccgaa
ctcccacccatccgcccggacctgctcatcgtcgaaagcacgtacggagtccaaggccac
gaagcccgcgaatctcgcgaggcgcggttcacatcgagcgtgcacacgatcgtgaaacgc
ggtggacacgtgttgcttcctgtctttgcgctcgggcgcgctcaggaattgttgttgatc
ttggacgagtactgggccgcgcatcccgagttgcatggtgtcccggtttactacgcgagt
aatttggcgagaaagtgtatggcggtgtatcagacttatattcataccatgaactcgcat
attcgctcgaggttcgcaagaaaggataatccatttgtgttcaagcatatctcgcattta
cccgccactcgtggatgggaacgtaaaatcgctgaagcaggcccgtgtgtaattctagcc
tcgcccggattcatgagcagcggacccagtcgcgaactcctcgaactctgggctccagac
gccaagaacggagtgattattactgggtactcgatagaaggaaccatggcaagggatatt
attctcgaaccggacgagatcaagccataccgttcggatggacctgacgggaataaaatg
attccgcgtaggttatcggttgagtatatatctttcagcgcgcatgtcgatggacctcag
aatacggagtttatcgaggctgtcggagcgaggcatgtaatcctcgtgcacggcgaacaa
actgccatgggccgtctgcgtggatcattgcaagcccgatacaaggacagggacgaagat
gtcaaggtccatgctcccaaaaatctagaaactctgaaactcagtttcagaggcgaacga
gtagccaaggccattggtagcttggcaacccctcttccatcagtgggatccacgctctcg
ggactccttatctcaaaagattactcttacacgctcttgtccacgaaagaccttcgcgat
tttacgggtctgtcgttgagtactgttacccagaaacagcgcgtcccgcttaccgtcgga
tgggctcttgtccgatatcacttggagggaatgtttggaaccgttaaagagggacaggat
gaggaaggtttacctgtcctacgggtcatgaacgcagttgatgtcaagctcgcttccgaa
caagaactcgtgctcgaatggatttcgggctcaagtagcgacatgattgcggacgctgct
gttgcacttcatgcgcaaagaacatttattgactattcgacagtgacttcacaccctcat
tcgcaccctcattctcacgacccaacaactaccgaccccgagaagcactctgcagaacgt
cttcagcatgttgttgaatttttggaggcacactttggagatgttgaatttgtggatcct
agtcaacaaggagatgtcagtatgagcgagacagcggacacaaagaccgaaatggaggtt
gaatcgaaacccgaagccggcgacgcaaagcccgagaacgtagacgaagaaaccaaggac
cttgacatggacgatgccgaaggtgaccaagattataaaaggcctaacagaatgcctatc
cccttgggtcctcacttgctagtcaaagtcgacaactatgaagcgcgcgttagcattcct
tctatggccgtgtcatgcgactacgatcccctccgtcgccgggttaacgctgttttagag
atggctgttgctaccatagatactctggccgactcttatgaagtcaccggacagaatgag
gtttctgtacaggcaattagagaagacacgaaagagatgatgatcgaatcgagtgcttaa

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