KEGG   Rhizoctonia solani: RhiXN_07065
Entry
RhiXN_07065       CDS       T09256                                 
Name
(RefSeq) pectate lyase
  KO
K10877  DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    RhiXN_07065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rsx03400]
    RhiXN_07065
DNA repair and recombination proteins [BR:rsx03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Rad54 family proteins
     RhiXN_07065
SSDB
Motif
Pfam: Pectate_lyase SNF2-rel_dom Helicase_C ResIII ZGRF1-like_N HDA2-3
Other DBs
NCBI-GeneID: 67029344
NCBI-ProteinID: XP_043185353
UniProt: A0A8H8P771
LinkDB
Position
13:join(684512..684686,684760..684859,684938..685125,685179..685458,686509..686730,686781..686817,686870..686931,686982..687048,687110..687393,687451..687549,687603..687672,687730..688052,688100..688198,688251..688320,688382..688560,688608..688682,688730..688800,688851..688926,688974..688995,689047..689078,689149..689191,689241..689296,689346..689417,689471..689521,689575..689595,689649..689680,689737..689861,689913..689940,689995..690101,690153..690310,690373..690500,690557..690600,690650..690753,690805..690872,690933..691059,691115..691124,691180..691228,691291..691335,691388..691401,691449..691511,691558..691833,691883..692116)
AA seq 1461 aa
MVHISFATLTVIAGVLAQTALAAPSEKRAASCSFPNPSSSTDVKFDAARTIKAGESFDGK
NLRYHRGVTCGGQKEGGDKDAVFLLESGATLSNAVIGKNQNEGVHCKGPCTIRNVWFEDV
CEDAITIRQSSGTTTITGGGAKNADDKVIQHNGGGLVKIDSYCVQDFGKLYRSCGNCSTQ
VKREVQISNIIARNGKVLAGVNSNYGDVATIDTKTNSYTSVKSICNTYQGNDKSQEPPML
TENKSNANNHFAKPSVPRDITHVPGADDRNSNAPSRHHYTMFITPSKRKAGEGEEPNGKR
AKEEPNSANTSYAKKIYYQVLWRAPQTKKHKTWDGDGVIVITGSTYELLDEEAKTLGSGK
ILGELVEGAEIKLGGREVQIEREVPATEFLSGKIFGGNASSYQPAAKSVTLNPRQSGFVA
PKFNTPRLSNAAKAIPDAKGKGVDRTNTQAKPAAAPPQSVVSAAGLYWTANWRRPQARKH
KVWEGSGAISLADGQLKLVNEEGHTVGVKAWKGDPPDFGDVIIVGGHEAEIDAPLSSVEY
AASFRPPTVRVVSVEGTGEDAIDGAPAAEIDLTYDVSPVKSKSPAKNGTTRPFTGQPLSK
FSINATRKPTNHAFRPPTMKTVETGVGATGCWTSNWRKRQTKKHKSWEGSGIVELTNNTM
KLYNDKGRLLKTMRWKSEVPLTGVTFSIDNLEVELQTPVPMEDLESKTCFEPGYSPPGTS
TSLAPIAANSTYVAPRSFYAAPEKKEKPPGPLYDPDADGALVMPTPNEAHQKKYNTKNLP
VVPVVVDPMLTKFLRPHQREGIQFMYESVMGMRTREQHGCILADEMGLGKTLQTIALVWT
LLRNPSGAVPGVIGKALIISAIVDTTLSELEKRVHKWLGRDRLRVFVGDKDKNNIKQFMN
SRIHHVLIIGYEKLRTVIDDLTYCTPPIGLIVCDEGHRLKSAQAKTTKMFEALKRTPRRI
ILSGTPIQNDLGEFHAMADFCNSGMLEEYPRFRRIYETPILKSRSPEASAKDIELGAARA
AQLNELAKSFVLRRTADILTNYLPPKTEYVLFVQPTALQLSVFQKILRPTMFKICPIMLA
KPDKGAGAENGKTTRTLVQEALGLLPPGAAPDDITLSGKLIALATLLKQLRQTTEEKCIL
VSHYTSTLNIVEAYCRSVYYTYSRLDGSTAVTKRQQLVDEFNQAKQSNKFLFLLSAKAGG
VGLNLIGASRLILIDSDWNPSHDLQSMARIHRDGQKRPVFIYRLITTGTIDEKIYQRQVT
KLGLSNSLMSESSGKEANSSSKSSADSFTQRDLQDIFSIHPHTLCQTHELLQCHCSNSDH
VVSSNANSDDESELVDPSELAKSVGKKSRKNVINDSDSDSSSESEVEMGFVPASQVKPSK
MSKAEKKRRREALASLSQWRHINCFMDGCSELIQDPVLLHILQAADSTMVSSFLADQSGQ
QKDWGGMVSYAFEKRSGSQLT
NT seq 4386 nt   +upstreamnt  +downstreamnt
atggttcatatctctttcgctaccttgaccgtcatcgccggcgtccttgcccaaaccgcg
ctcgctgcaccttctgaaaaacgggcagccagctgctcgttcccgaacccatcttcatcc
accgacgtcaagttcgatgccgctcgcaccatcaaggccggcgagtcctttgacggcaag
aacctccgctaccaccgcggtgtcacatgcggtggccagaaggaaggtggcgacaaggat
gctgtcttcctgctcgagtccggcgctaccctatccaatgccgtgatcggcaaaaaccaa
aacgagggcgtccactgcaagggaccttgcaccatccgcaacgtctggttcgaggacgta
tgcgaggacgcaatcaccatcaggcagagctccggtacgaccaccatcaccggcggaggc
gccaagaacgccgacgacaaggtcattcagcacaacgggggaggtcttgtcaagatcgac
tcgtactgcgtccaggacttcggcaagctctatcgatcgtgcggcaactgcagcacgcag
gtgaagcgcgaggtgcagatcagcaacatcatcgctcgcaacggcaaggtgctcgcaggc
gtgaactcgaactacggggatgtagcgacgatcgacacgaagacgaactcgtacacaagc
gtcaagtcgatctgcaacacgtaccagggcaacgacaagagccaggagcctcctatgctg
acggagaacaagtcgaatgccaataaccactttgctaagccgtctgtgccacgtgacatt
acacacgtccctggagctgatgatcgaaattcgaacgcgccttcccgccaccattatacc
atgtttatcactccatccaaacgaaaagctggagaaggcgaggagcccaatgggaagaga
gcgaaagaagaaccaaactcagcaaatacttcatacgccaaaaagatctattaccaagta
ctctggagagccccccagacaaaaaagcacaagacctgggatggcgacggtgtaatagtc
attactggttcaacctatgagcttctggatgaggaggctaagaccctcggtagcgggaag
attcttggggagctcgtagagggggcggaaattaaacttggtggcagagaggtacaaata
gagagggaggttcctgccacagagttcttgtctggtaagatattcggcgggaatgcgtca
tcgtatcaaccggccgcaaagtcggtcactctcaaccctcgtcaaagtggctttgtcgca
ccaaagttcaacactcctcgactgtccaatgcggctaaagctattccagatgcgaagggc
aaaggcgtagatcgcacaaatacccaagcgaagccggctgcagccccacctcaatctgtg
gtatcggccgcaggtctgtattggactgctaattggcgccgcccacaggcccgcaagcac
aaagtatgggagggatcaggggctatttcgctggccgacggccagctgaagctggtgaac
gaggaaggacatactgttggagtcaaggcttggaagggggacccaccagattttggggac
gtgattatcgttggagggcatgaagcggaaatcgacgcgcctctgtccagcgttgaatac
gcagcatcatttaggccccctacagttcgcgtggtctcggtcgaagggacaggcgaggat
gccattgacggtgcaccggcggcggaaatcgaccttacatatgatgtgtccccggtcaag
agcaaatctcctgccaagaatggcacaactcgcccttttactgggcaacctctttccaaa
ttctctatcaatgcgacacgtaaaccaaccaatcatgcgttcaggccacccacgatgaag
accgtcgaaactggagttggggcaacaggttgttggacttccaattggcgcaaacgacag
accaagaaacacaaatcatgggaaggctccggaatcgtcgaacttaccaacaatacgatg
aagctttacaatgacaagggccgcctgctcaagacgatgaggtggaagtccgaggtgcca
ctcactggtgtcaccttttcgatagacaatctcgaagtggaacttcagactccagtgcct
atggaagacctcgaatcaaagacctgcttcgagcctgggtactcgccccccggaacatcg
accagcctggcacctatcgccgccaattccacttatgttgctcctcgttcgttctatgct
gctccagagaagaaagagaagccccctggccctttgtacgacccggatgcagatggagct
cttgtcatgccaactccgaatgaggcacaccagaagaaatataacaccaaaaacctcccg
gtagtgccagtagtagtcgatccgatgctaactaaatttttgcgtcctcatcaacgagaa
gggattcaattcatgtatgagagtgtgatgggaatgaggacccgggagcaacatggttgt
atccttgcggatgaaatggggttgggtaaaactttgcagacgattgcccttgtctggacg
ctgttacgcaacccatcaggcgctgtgccaggggtaattggaaaggcattaattatcagc
gcaattgttgataccactctttcagaactggagaaaagagttcataaatggcttggtcga
gaccgccttagggtattcgtgggagacaaggacaagaacaatatcaaacaatttatgaac
tcgagaatacaccacgtgctgattattggctatgagaagcttcgaacggtcatcgacgat
ttaacttactgcaccccgcctattggacttattgtttgcgacgaaggtcaccgtctcaag
tctgctcaagctaaaactaccaaaatgttcgaagccctaaaacgaacacctcgacgaata
attttgtcaggtacacctattcagaatgatttgggcgagtttcatgctatggcagatttt
tgtaattccgggatgcttgaggagtacccgcgctttcgtagaatttacgaaacgcctatt
ttgaagagtcggtctcccgaagcgagtgcaaaagatatcgagctcggggcggcacgagct
gcgcagctcaatgagctcgccaaatcatttgtgttgagaaggaccgcagatatccttacc
aactacctccctcctaaaaccgaatacgtcttgttcgtacagcctacggcactacagctg
tcggtctttcaaaagatccttcgcccgaccatgttcaagatttgtccgattatgcttgcc
aaaccggacaaaggcgctggtgccgaaaatgggaagacgacccggacacttgttcaggaa
gctttggggcttttaccgcctggggcagctccggatgacattactttgagtggtaaacta
attgcacttgccactcttcttaaacagttgcgacaaacaacagaagagaaatgtatactc
gtatctcactacacgtcgacactgaacattgtggaggcatactgccgtagcgtgtattat
acctatagtcgtttggatggctccactgcagtgaccaaacgccagcaacttgttgacgaa
tttaaccaagccaagcagtcgaataaatttttatttctcctgagcgcgaaagcgggcggc
gttgggctgaatttaattggtgcttcccggttaatcctaatcgacagcgactggaatcct
tcccacgacctacagtcgatggctcggattcatcgtgatggacagaaacgccccgttttt
atatatcggttgataacgaccggcaccattgacgagaaaatttatcaacgacaggttacc
aagttgggcctgagtaactcactgatgtccgagtcatccggcaaggaagctaattcgtcc
tcaaagtcaagtgcggactctttcacccaacgagatctgcaagatattttcagcattcac
ccgcatactctatgccaaactcacgagctcttgcaatgccattgttcaaacagcgaccat
gttgtgagctcgaatgccaactctgatgacgaatcagagcttgtagaccccagtgaacta
gccaagagcgttggcaagaagtctaggaaaaatgttatcaacgactcggattcagattcc
agttcagagtccgaggtagaaatgggattcgttcctgcatcccaagtcaaacccagtaaa
atgagtaaagcggaaaagaaacgaaggcgtgaagccctggcttcattaagccaatggagg
catataaattgcttcatggatggctgctccgaacttattcaggaccctgtccttttgcac
atcctacaggcggccgatagcactatggtctcgagctttctcgcggaccagtccggacaa
caaaaagactggggtgggatggttagctatgcgttcgagaaacggtcgggctcccaactc
acttag

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