Rhizoctonia solani: RhiXN_08352
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Entry
RhiXN_08352 CDS
T09256
Name
(RefSeq) 3' exoribonuclease family domain-containing protein
KO
K12587
exosome complex component MTR3
Organism
rsx
Rhizoctonia solani
Pathway
rsx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RhiXN_08352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_08352
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
RhiXN_08352
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
DUF2274
Motif
Other DBs
NCBI-GeneID:
67030631
NCBI-ProteinID:
XP_043183553
LinkDB
All DBs
Position
10:join(552366..552507,552561..552639,552688..552799,552846..553226,553279..553377)
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AA seq
270 aa
AA seq
DB search
MAQHSNFDRRRINGPESSSYPIFENNEEDKIPTISRTTRKNDEIRPIFLQLGLVSQANGS
AYIETEKTKVAVAVYGPREIKAGSTYTENGRLKVEVKFSPFSCKRRRAPIRDAESPTLAS
QIHQSLLPAVRLELFPKSQLDVYVHILEVDGIESCVGAAATAASAALADAGIDMLGLAVS
CTAAINRSVTGYAELLLDPNGQEADAARGLVMVTCLPALGTVTNMIQTGLVHPDEVIQCM
DVCTKQCEDIHFVVAQSLLESAQTRSRKQE
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atggcccagcactcaaatttcgatcgaaggcgaataaacgggcccgaatcaagctcatat
cctatattcgagaacaatgaagaagataaaataccaacaatatctcgcacaacgcgcaaa
aacgacgaaatccggcctattttcctccagctgggtctagtgagccaagcgaacgggtca
gcctacatcgaaacggaaaaaaccaaggttgctgtcgcagtgtatggacctcgggaaatc
aaagcgggttcaacctatacggagaatggtcgtttaaaagtggaagtcaagttctctccg
ttttcatgtaaacgaaggagggctcctattcgagacgcagaatcgccgacattggcctca
cagatccaccagtcccttcttcccgctgtgcgactagaactttttccaaaatcacaattg
gacgtatacgtgcatatcctcgaggtggacggcatcgagtcctgcgtgggtgcggccgcg
acggcagctagcgcggccttggccgacgctggaatcgacatgcttggattggcggtcagc
tgcacagctgccattaaccgctcggtaacgggctatgcagaactgttattggatcccaat
ggccaggaagcggacgccgctcgggggttagtaatggtgacctgtttaccggcactgggc
acagtcacgaacatgattcaaactggtctagtacacccggatgaagtaattcaatgcatg
gacgtatgcacgaaacaatgcgaagacattcactttgtagttgcccagtcattactagaa
tccgctcaaactcggagccgaaaacaagaatga
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