Rhizoctonia solani: RhiXN_09048
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Entry
RhiXN_09048 CDS
T09256
Name
(RefSeq) VTS1 RNA-binding family SAM domain protein
KO
K27407
RNA-binding protein VTS1
Organism
rsx
Rhizoctonia solani
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_09048
04131 Membrane trafficking [BR:
rsx04131
]
RhiXN_09048
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
RhiXN_09048
Membrane trafficking [BR:
rsx04131
]
SNARE
SNARE associated proteins
Others
RhiXN_09048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
SAM_1
Motif
Other DBs
NCBI-GeneID:
67031327
NCBI-ProteinID:
XP_043180310
LinkDB
All DBs
Position
5:join(797956..798175,798225..798341,798392..799875,799931..799987)
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AA seq
625 aa
AA seq
DB search
MALRPSPSPSPGPTGHPNRQARASLGPGSSLTVGTNLGPAPRNVANQPISPRPAGMRPTS
ELITGSNMYQNPEAEAIDQWFENLQNYEATLEEMAAASLDVNFKEELSAIEQWFRVLSEA
ERTAALYSLLQHSTQVQIRFFITVLQQMARADPMTALLSPAVGASMQSQMEAKLASLGLK
SPGPPASPSARSFNRQSEGTGNFLSPDSAAVPPSPGGAGAASGDAAATLAQQRARLKATN
AAHRISAPGTLAADAARANVWSATSLSQVAERGPSPSPGGDLLSPPPAGTRPKSTDFTGL
AAQFRKGQPGDNIDDQLSPMVGGNWASMVNTPVVPMFSGNNNGAGSSAAGNGTDANGQNL
DAAALKLANWTMANNPGGPVVQLDDARKFRRTSNATKSTDVSAPVNKKPQPPAANPNPGF
LSPQQPQPTNWQHQPNRSPDPTAMANFNLGGLSPGMNMNMGMMNGFGMMTPGMGMPGFGM
NNLEGLQAQLIAAQLAQLNAGFPLGMMPGLAGQNQQPGPRSARSGASGRRSPKPPTNSAA
KGGEDDIDPSLLNDVPGWLRSLRLHKYTPNFEGMAWRDMVVMDEAALEAKGVAALGARRK
MLKTFQLVREKMGIEEPEGSRSKDE
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggctctacgacccagccccagcccctcgcctggtcccactggacatcccaaccgccaa
gcacgtgcctctctcggtcctggctcgtccttgactgtcggtaccaacctcggtccggct
ccacgcaatgttgccaatcaaccgatatcgccccgcccagctggcatgcgtccaaccagc
gagttgatcactggctccaatatgtaccagaatccagaggccgaggcgatcgaccagtgg
ttcgaaaacctccaaaactacgaggccacccttgaagaaatggctgctgcttcgctcgat
gtcaatttcaaagaagagcttagcgccatcgagcagtggttccgcgtgttatccgaggcg
gagcgcacggccgctctttattcgctcctccagcactcgacccaagtccagattcggttc
tttatcaccgtactccaacagatggcccgtgcagaccccatgacagccctcctttctccc
gcagttggcgcatctatgcaaagtcaaatggaagccaagctagcctcattgggtctcaag
tccccgggcccaccagcctctccctcggctcgttccttcaaccgtcaatccgaaggcact
ggaaactttctttcccccgattccgccgctgttcctccttcccccggaggggcgggtgca
gcgtcgggtgatgcagctgctaccttggctcaacagcgtgcacgactgaaagcgaccaat
gctgcgcataggatttccgcaccgggaactttggctgccgatgccgcacgagccaatgtc
tggtctgctacgtccctgagccaagttgccgaacgtggcccatctccatctccaggcgga
gatctactctccccgccgccggccgggacccgacccaagagcaccgactttacaggactc
gccgcacaattccgcaaaggccagccgggcgacaacattgatgaccaactctctcccatg
gttggtggaaactgggcgagcatggtcaacacacccgttgtgcccatgttttctggtaac
aataatggtgccggaagctcggctgctgggaacggaacagacgccaatggtcagaacctc
gatgccgcagcgctcaaactcgcaaactggacaatggcgaataaccccggcggacctgtt
gttcaacttgatgacgcgcgtaagtttaggagaacgtccaacgcgaccaagtctaccgac
gtatctgcacctgtcaacaagaaaccccaacctcccgcagccaacccgaacccgggattc
ttgtccccacaacaaccccaaccgaccaactggcaacaccaacccaatcgtagcccagac
cctactgcaatggccaactttaaccttggtggattgagccccgggatgaacatgaacatg
ggcatgatgaacgggttcgggatgatgacgcctggaatgggaatgcctggattcgggatg
aacaatcttgaaggccttcaagctcaattgatagccgcccaacttgcgcaactgaacgct
ggattcccgctcggtatgatgccaggtctcgcagggcagaaccaacagcctggcccgcgt
tctgcacgatcgggcgcaagcggccgtcgttcgcccaagcctccaaccaactctgctgcc
aagggaggagaagacgatatcgatccgagcttgctgaacgatgttcccgggtggttgaga
agtctgcggttgcacaagtacaccccgaactttgaaggcatggcgtggagggatatggtg
gttatggacgaggccgctctcgaagccaagggtgtggctgcgttgggtgcaaggaggaag
atgttgaagactttccaattggtccgggaaaaaatgggaatcgaagagccagaaggctcg
aggtccaaggacgagtag
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