Rhizoctonia solani: RhiXN_09769
Help
Entry
RhiXN_09769 CDS
T09256
Name
(RefSeq) Helicase associated domain (HA2)
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rsx
Rhizoctonia solani
Pathway
rsx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
RhiXN_09769
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsx03041
]
RhiXN_09769
Enzymes [BR:
rsx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RhiXN_09769
Spliceosome [BR:
rsx03041
]
Complex C
Other components
Step II factors
RhiXN_09769
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_30
AAA_19
T2SSE
nSTAND3
AAA_16
TsaE
NB-ARC
Cas3-like_C_2
PhoH
SLFN-g3_helicase
Flavi_DEAD
Ploopntkinase3
Motif
Other DBs
NCBI-GeneID:
67032048
NCBI-ProteinID:
XP_043182419
UniProt:
A0A8H8SZ20
LinkDB
All DBs
Position
8:complement(join(1031077..1031132,1031189..1031553,1031606..1032237,1032289..1032812,1032865..1033231,1033282..1034150,1034199..1034879,1034930..1035002))
Genome browser
AA seq
1188 aa
AA seq
DB search
MDDIYQFELLSLTSTVAKEILNNAGINDKTLAEFIINLHEQSKTQDAFKQKLKDVGADFP
ESFIENLDRLILSLHPKYKRKKAKKAKKDGQPVDETDTKRRMFPGLSLPDQPWQPSNEFG
KDNSKDKEVDGGKDAASKEVDDLMSQLEGVAKKKASRPTAADFIEPEPPSKRPRRDMEVD
SPPRGGYGRDRDDRRDRDERGGYGRDEDRGRRPRPTFDEAPVLYKIYDGTVQGIKDFGAF
VQLEGVQGRVQGMVHVSMMAPGGGRVNSAHDLLSRNQRVKVKVMSVGSRTSLSMKDVDQK
TGQDLTPHLRIKSEAELAQEALTGSNSAPLGQRGMGGMSGITYDDSAPVRSAKRLTSPER
WEIKQLIASGAVDASEYPNLDEDFNNPHAKAEVEEELDVEVREEEPSFLAGQTKMTLNLS
PVKIVKAPDGSLNRAALAGVSLAKERRELRQQEVNEQADSEARDFSTPWLDPMSQGDDKV
FAQDTRGNIMGQKAGEVPQWRAETFNKATTFGRITSLSIAEQRQSLPIYKLREKLVQAVR
DHQILIVVGDTGSGKTTQMTQYLAEEGFAEHGKIGCTQPRRVAAMSVAKRVAEEVGCRLG
QEVGYTIRFEDCTSPETRIKYMTDGMLQRECLIDPDMTAYSVLILDEAHERTIATDVLFG
LLKKSAKRRPDLKIIVTSATLNAEKFSEYFFKCPIFTIPGRTYPVEILYTKEPESDYLDA
SLITIMQIHLSEPPGDILLFLTGQEEIDTACQILYERMKALGPQVPELIILPVYSALPSE
MQSKIFEPAPPGARKVVIATNIAETSITIDGIYYVIDPGFVKQNAYDPRLGMDSLVVTPI
SQAQANQRAGRAGRTGPGKCYRLYTEVAFRNEMLPSPIPDIQRQNLSHTILMLKAMGIND
LINFGFMDPPPAQTLLTALEQLYALSALDDEGLLTRLGRKMADFPMEPPLAKMLITSVDL
GCSEEILSIVAMLSVQNVFYRPKEKQAQADSKKAKFHQPEGDHLTLLTVYNGWKASKFSN
PWCYENFIQARSMRRAQDVRKQLLGIMDRYKHDIISSGKDYNRVRRAICSGFFRNAAKKD
PQEGYKTLVEGTPVYIHPSSALFNRNPEWVIYNELLLTTREYCHTVTAIEPKWLVEVAPQ
FFKVADANKISKRKKQEKIEPLYNKYEKPDEWRLSKIKRSARSSQTFG
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atggatgacatttaccagtttgagctcctctctttgacgtcgactgtagccaaggagatt
ctcaataatgcaggcatcaacgacaagacactcgcagagttcataatcaacctacacgaa
cagtcaaaaacacaggatgcatttaaacaaaaactcaaggacgtcggcgcagatttccca
gagtcgttcatcgagaatctggacagacttatactctctctccacccaaaatacaagcgt
aaaaaggcgaaaaaggcgaagaaggatggccaaccggtagatgagacagacaccaagcgc
cgtatgttccctggactatcacttcccgaccagccgtggcagccatcgaatgagtttgga
aaggacaatagcaaggacaaggaagttgatgggggaaaggatgctgcaagcaaggaggtc
gatgatttgatgtctcaactagagggcgtggcaaagaaaaaagcatcgaggcccaccgca
gccgactttatcgagcccgagccgccaagcaaacgcccgaggagagatatggaggtcgat
agcccaccacgaggtggctatggaagagaccgggacgacaggagggaccgggatgaacgg
ggtggctacggtagggacgaggaccgtgggcgccgaccccgcccaacatttgacgaggcg
cctgtgctctacaagatctacgacggcacggttcagggaattaaggactttggcgcgttt
gttcaactcgagggcgtccaaggccgagttcaagggatggtgcacgtgtcgatgatggca
cctggaggcggccgtgtaaattcggcgcacgatttattatccaggaaccagcgtgtcaag
gtcaaagttatgtctgtcggatccaggactagtttgtctatgaaggatgtcgatcaaaaa
accggccaagatctcacccctcatttgcgtatcaagtctgaagccgaacttgcccaagaa
gcattgacagggtcaaactctgcgcctttgggtcaacgagggatgggcggaatgagcggc
atcacttatgacgattcagcacctgtgcgcagcgcaaaacgattgacttcacctgagaga
tgggagatcaaacagttgatcgcttcgggagcggtcgatgcgagcgaataccccaacttg
gacgaagacttcaataaccctcatgccaaggccgaagtcgaagaggaactcgatgtcgag
gttcgagaagaagaaccatccttcctggctgggcagactaaaatgacactcaacctctca
cccgtcaaaatcgtcaaggccccagacggctcactcaaccgtgccgcgctcgccggtgtc
tcgctcgccaaggaacgcagagaactccgacaacaagaggttaacgagcaggccgactcg
gaggctcgagatttcagcacaccttggctggacccgatgtctcagggcgacgacaaggtc
tttgctcaggacacgcgagggaacatcatgggtcaaaaagcgggcgaagttccccagtgg
agagccgagacgtttaacaaggcgaccacgtttggtagaatcacgagcttgagcattgca
gaacaaaggcaaagtctgcctatttacaagcttcgggaaaagttagtccaggccgtgaga
gatcaccaaatcctgatcgtagtcggagatactggctcgggcaaaactacccaaatgacc
cagtacctcgctgaagaaggattcgccgaacatggaaaaattggatgtacccaaccacgt
cgagtggccgccatgtccgtcgcgaagcgtgttgccgaagaggtcggctgtcgacttggc
caggaagtcgggtatacgatccgattcgaggactgcacgagccccgagacgaggatcaag
tacatgaccgatggtatgcttcagcgtgaatgcttgatcgacccggacatgactgcgtac
tcggtattgattctggatgaggcgcacgagcggacgatcgcgaccgatgtcttgtttggt
ttgttgaagaagagtgcgaaacgaagaccagacttgaagatcatcgttacttctgcgaca
ctcaacgccgaaaagttctctgaatacttcttcaaatgtcccatcttcactattcctgga
cgaacataccccgtcgaaatcctgtataccaaagaacccgaatcggactacctcgacgca
tcactcattaccattatgcaaatccatctttccgaacctccaggcgatatcttgcttttc
ttgactggccaagaagaaatcgacacggcttgtcaaattctctacgaacgaatgaaagct
cttggccctcaagttccggagctaatcatcctgcccgtatactcggctctgccttccgag
atgcagagtaagattttcgaacctgccccacctggtgcgcgaaaggtggtcattgcgacg
aacattgccgagacgagtattaccatcgacgggatttattatgtcattgatccaggattc
gtcaaacagaatgcgtacgaccctagattgggtatggattcgctggttgtgactccaatt
tcccaagcccaagccaaccaacgagctggtcgtgcgggtcgtaccggtcctggaaagtgt
taccgcctttacactgaagtcgccttccgaaacgaaatgcttccctctccgatccccgat
attcaacgccaaaatctctcgcacacaatcttgatgctcaaagccatgggcatcaacgat
ctcatcaacttcggattcatggaccctccgccagcccaaacactactcaccgcgctcgaa
cagctctatgcgctctctgcactcgatgacgaaggtcttcttacccgcctcggtcgcaag
atggctgatttccctatggaacctccattggccaagatgctgatcacgagcgtcgacctc
gggtgctcggaagaaatcttatcaatagtcgcgatgctgagcgtgcaaaatgtattctac
cgtcctaaggaaaaacaagcgcaggcggacagcaaaaaggccaagttccaccaacccgag
ggcgaccatctgacgcttttgacggtctacaacggttggaaggccagcaagttctcgaac
ccttggtgctacgagaatttcattcaggcgaggagtatgcgacgtgcacaggacgtaagg
aagcagttgttgggtattatggatcgatacaagcatgacattatttcctctgggaaagac
tacaaccgggttcggcgcgcgatttgctcgggtttcttccgtaacgcagcgaaaaaggat
cctcaggaagggtacaagacgctcgtcgaaggtacccctgtatacattcacccttcgtct
gcgttgttcaaccgaaacccggaatgggtcatctacaacgaattgctgcttacaacccgc
gagtactgccataccgtgacggccatagaacccaaatggcttgtcgaagtcgccccgcag
ttcttcaaggtcgcggatgcaaacaagataagtaaacgcaagaaacaagagaagattgag
ccattatacaacaaatacgagaaaccggatgaatggcgtctctcaaaaatcaagaggagc
gcgaggtccagtcaaacatttggctag
DBGET
integrated database retrieval system
