KEGG   Rhizoctonia solani: RhiXN_10505
Entry
RhiXN_10505       CDS       T09256                                 
Name
(RefSeq) pre-mRNA polyadenylation factor PF I, YSH1-component related protein
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    RhiXN_10505
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsx03021]
    RhiXN_10505
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_10505
Transcription machinery [BR:rsx03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     RhiXN_10505
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     RhiXN_10505
    U7-dependent histone pre-mRNA processing factors
     RhiXN_10505
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_3
Other DBs
NCBI-GeneID: 67032784
NCBI-ProteinID: XP_043184418
UniProt: A0A8H8P1U1
LinkDB
Position
11:complement(join(1526848..1527021,1527078..1527460,1527514..1527655,1527711..1527965,1528022..1528171,1528229..1528393,1528603..1528792,1528845..1529423,1529475..1529566,1529619..1529664,1529722..1529924))
AA seq 792 aa
MNDADSPILSLTMLGAGQEVGRSCCVIKYRGKTVVCDAGVHPAHSGLASLPFVDELDWST
VDAILVTHFHLDHAASLTYVMEKTNFKEGKGKVYMTHPTKAVYKYIMQDFVRMATAGNES
LYTPLDVSLSLSHIIPISAHQLISPTPGLSFTPYHAGHVLGACMFLIDIAGLQILYTGDY
SREEDRHLVRAELPPIRPDLLIVESTYGVQGHEARESREARFTSSVHTIVKRGGHVLLPV
FALGRAQELLLILDEYWAAHPELHGVPVYYASNLARKCMAVYQTYIHTMNSHIRSRFARK
DNPFVFKHISHLPATRGWERKIAEAGPCVILASPGFMSSGPSRELLELWAPDAKNGVIIT
GYSIEGTMARDIILEPDEIKPYRSDGPDGNKMIPRRLSVEYISFSAHVDGPQNTEFIEAV
GARHVILVHGEQTAMGRLRGSLQARYKDRDEDVKVHAPKNLETLKLSFRGERVAKAIGSL
ATPLPSVGSTLSGLLISKDYSYTLLSTKDLRDFTGLSLSTVTQKQRVPLTVGWALVRYHL
EGMFGTVKEGQDEEGLPVLRVMNAVDVKLASEQELVLEWISGSSSDMIADAAVALVLGID
RSPASVKLTSHPHSHPHSHDPTTTDPEKHSAERLQHVVEFLEAHFGDVEFVDPSQQGDVS
MSETADTKTEMEVESKPEAGDAKPENVDEETKDLDMDDAEGDQDYKRPNRMPIPLGPHLL
VKVDNYEARVSIPSMAVSCDYDPLRRRVNAVLEMAVATIDTLADSYEVTGQNEVSVQAIR
EDTKEMMIESSA
NT seq 2379 nt   +upstreamnt  +downstreamnt
atgaacgacgccgactcgcctattctctctttgactatgcttggcgccggtcaagaggtc
ggtcgttcttgctgtgtaataaagtatcgtggtaaaactgttgtgtgtgacgcgggtgtg
catcctgcccattcgggtctcgcaagtttaccgtttgtggacgaattggattggagtact
gtagatgcgatattggttactcactttcatttagatcatgcggctagtttgacgtacgtc
atggaaaaaacgaattttaaagaaggaaaaggaaaggtctacatgacacacccgactaag
gccgtatacaagtacattatgcaagattttgttcgcatggctactgccgggaacgaatct
ctttatactccactggacgtctcactctccctctcgcacatcatccccatctcggctcac
caactcatctctcccacccctggattgtcctttacaccctaccacgcaggtcacgttcta
ggcgcatgcatgttcctgatcgacattgcaggcctccaaatcctctacacgggcgactac
tcccgagaagaagaccgccacctcgtccgcgccgaactcccacccatccgcccggacctg
ctcatcgtcgaaagcacgtacggagtccaaggccacgaagcccgcgaatctcgcgaggcg
cggttcacatcgagcgtgcacacgatcgtgaaacgcggtggacacgtgttgcttcctgtc
tttgcgctcgggcgcgctcaggaattgttgttgatcttggacgagtactgggccgcgcat
cccgagttgcatggtgtcccggtttactacgcgagtaatttggcgagaaagtgtatggcg
gtgtatcagacttatattcataccatgaactcgcatattcgctcgaggttcgcaagaaag
gataatccatttgtgttcaagcatatctcgcatttacccgccactcgtggatgggaacgt
aaaatcgctgaagcaggcccgtgtgtaattctagcctcgcccggattcatgagcagcgga
cccagtcgcgaactcctcgaactctgggctccagacgccaagaacggagtgattattact
gggtactcgatagaaggaaccatggcaagggatattattctcgaaccggacgagatcaag
ccataccgttcggatggacctgacgggaataaaatgattccgcgtaggttatcggttgag
tatatatctttcagcgcgcatgtcgatggacctcagaatacggagtttatcgaggctgtc
ggagcgaggcatgtaatcctcgtgcacggcgaacaaactgccatgggccgtctgcgtgga
tcattgcaagcccgatacaaggacagggacgaagatgtcaaggtccatgctcccaaaaat
ctagaaactctgaaactcagtttcagaggcgaacgagtagccaaggccattggtagcttg
gcaacccctcttccatcagtgggatccacgctctcgggactccttatctcaaaagattac
tcttacacgctcttgtccacgaaagaccttcgcgattttacgggtctgtcgttgagtact
gttacccagaaacagcgcgtcccgcttaccgtcggatgggctcttgtccgatatcacttg
gagggaatgtttggaaccgttaaagagggacaggatgaggaaggtttacctgtcctacgg
gtcatgaacgcagttgatgtcaagctcgcttccgaacaagaactcgtgctcgaatggatt
tcgggctcaagtagcgatatgattgcggacgctgctgttgcacttgtccttggaatcgat
agaagtcctgcatccgtgaaactgacttcacaccctcattcgcaccctcattctcatgac
ccaacaactaccgaccccgagaagcactctgcagaacgtcttcagcatgttgttgaattt
ttggaggcacactttggagatgttgaatttgtggatcctagtcaacaaggagatgtcagt
atgagcgagacagcggacacaaagaccgaaatggaggttgaatcgaaacccgaagccggc
gacgcaaagcccgagaacgtagacgaagaaaccaaggaccttgacatggacgatgccgaa
ggtgaccaagattataaaaggcctaacagaatgcctatccccttgggtcctcacttgcta
gtcaaagtcgacaactatgaagcgcgcgttagcattccttctatggccgtgtcatgcgac
tacgatcccctccgtcgccgggttaacgctgttttagagatggctgttgctaccatagat
actctggccgactcttatgaagtcaccggacagaatgaggtttctgtacaggcaattaga
gaagacacgaaagagatgatgatcgaatcgagtgcttaa

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