Rhizoctonia solani: RhiXN_10505
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Entry
RhiXN_10505 CDS
T09256
Name
(RefSeq) pre-mRNA polyadenylation factor PF I, YSH1-component related protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
rsx
Rhizoctonia solani
Pathway
rsx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
RhiXN_10505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsx03021
]
RhiXN_10505
03019 Messenger RNA biogenesis [BR:
rsx03019
]
RhiXN_10505
Transcription machinery [BR:
rsx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
RhiXN_10505
Messenger RNA biogenesis [BR:
rsx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
RhiXN_10505
U7-dependent histone pre-mRNA processing factors
RhiXN_10505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
67032784
NCBI-ProteinID:
XP_043184418
UniProt:
A0A8H8P1U1
LinkDB
All DBs
Position
11:complement(join(1526848..1527021,1527078..1527460,1527514..1527655,1527711..1527965,1528022..1528171,1528229..1528393,1528603..1528792,1528845..1529423,1529475..1529566,1529619..1529664,1529722..1529924))
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AA seq
792 aa
AA seq
DB search
MNDADSPILSLTMLGAGQEVGRSCCVIKYRGKTVVCDAGVHPAHSGLASLPFVDELDWST
VDAILVTHFHLDHAASLTYVMEKTNFKEGKGKVYMTHPTKAVYKYIMQDFVRMATAGNES
LYTPLDVSLSLSHIIPISAHQLISPTPGLSFTPYHAGHVLGACMFLIDIAGLQILYTGDY
SREEDRHLVRAELPPIRPDLLIVESTYGVQGHEARESREARFTSSVHTIVKRGGHVLLPV
FALGRAQELLLILDEYWAAHPELHGVPVYYASNLARKCMAVYQTYIHTMNSHIRSRFARK
DNPFVFKHISHLPATRGWERKIAEAGPCVILASPGFMSSGPSRELLELWAPDAKNGVIIT
GYSIEGTMARDIILEPDEIKPYRSDGPDGNKMIPRRLSVEYISFSAHVDGPQNTEFIEAV
GARHVILVHGEQTAMGRLRGSLQARYKDRDEDVKVHAPKNLETLKLSFRGERVAKAIGSL
ATPLPSVGSTLSGLLISKDYSYTLLSTKDLRDFTGLSLSTVTQKQRVPLTVGWALVRYHL
EGMFGTVKEGQDEEGLPVLRVMNAVDVKLASEQELVLEWISGSSSDMIADAAVALVLGID
RSPASVKLTSHPHSHPHSHDPTTTDPEKHSAERLQHVVEFLEAHFGDVEFVDPSQQGDVS
MSETADTKTEMEVESKPEAGDAKPENVDEETKDLDMDDAEGDQDYKRPNRMPIPLGPHLL
VKVDNYEARVSIPSMAVSCDYDPLRRRVNAVLEMAVATIDTLADSYEVTGQNEVSVQAIR
EDTKEMMIESSA
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgccgactcgcctattctctctttgactatgcttggcgccggtcaagaggtc
ggtcgttcttgctgtgtaataaagtatcgtggtaaaactgttgtgtgtgacgcgggtgtg
catcctgcccattcgggtctcgcaagtttaccgtttgtggacgaattggattggagtact
gtagatgcgatattggttactcactttcatttagatcatgcggctagtttgacgtacgtc
atggaaaaaacgaattttaaagaaggaaaaggaaaggtctacatgacacacccgactaag
gccgtatacaagtacattatgcaagattttgttcgcatggctactgccgggaacgaatct
ctttatactccactggacgtctcactctccctctcgcacatcatccccatctcggctcac
caactcatctctcccacccctggattgtcctttacaccctaccacgcaggtcacgttcta
ggcgcatgcatgttcctgatcgacattgcaggcctccaaatcctctacacgggcgactac
tcccgagaagaagaccgccacctcgtccgcgccgaactcccacccatccgcccggacctg
ctcatcgtcgaaagcacgtacggagtccaaggccacgaagcccgcgaatctcgcgaggcg
cggttcacatcgagcgtgcacacgatcgtgaaacgcggtggacacgtgttgcttcctgtc
tttgcgctcgggcgcgctcaggaattgttgttgatcttggacgagtactgggccgcgcat
cccgagttgcatggtgtcccggtttactacgcgagtaatttggcgagaaagtgtatggcg
gtgtatcagacttatattcataccatgaactcgcatattcgctcgaggttcgcaagaaag
gataatccatttgtgttcaagcatatctcgcatttacccgccactcgtggatgggaacgt
aaaatcgctgaagcaggcccgtgtgtaattctagcctcgcccggattcatgagcagcgga
cccagtcgcgaactcctcgaactctgggctccagacgccaagaacggagtgattattact
gggtactcgatagaaggaaccatggcaagggatattattctcgaaccggacgagatcaag
ccataccgttcggatggacctgacgggaataaaatgattccgcgtaggttatcggttgag
tatatatctttcagcgcgcatgtcgatggacctcagaatacggagtttatcgaggctgtc
ggagcgaggcatgtaatcctcgtgcacggcgaacaaactgccatgggccgtctgcgtgga
tcattgcaagcccgatacaaggacagggacgaagatgtcaaggtccatgctcccaaaaat
ctagaaactctgaaactcagtttcagaggcgaacgagtagccaaggccattggtagcttg
gcaacccctcttccatcagtgggatccacgctctcgggactccttatctcaaaagattac
tcttacacgctcttgtccacgaaagaccttcgcgattttacgggtctgtcgttgagtact
gttacccagaaacagcgcgtcccgcttaccgtcggatgggctcttgtccgatatcacttg
gagggaatgtttggaaccgttaaagagggacaggatgaggaaggtttacctgtcctacgg
gtcatgaacgcagttgatgtcaagctcgcttccgaacaagaactcgtgctcgaatggatt
tcgggctcaagtagcgatatgattgcggacgctgctgttgcacttgtccttggaatcgat
agaagtcctgcatccgtgaaactgacttcacaccctcattcgcaccctcattctcatgac
ccaacaactaccgaccccgagaagcactctgcagaacgtcttcagcatgttgttgaattt
ttggaggcacactttggagatgttgaatttgtggatcctagtcaacaaggagatgtcagt
atgagcgagacagcggacacaaagaccgaaatggaggttgaatcgaaacccgaagccggc
gacgcaaagcccgagaacgtagacgaagaaaccaaggaccttgacatggacgatgccgaa
ggtgaccaagattataaaaggcctaacagaatgcctatccccttgggtcctcacttgcta
gtcaaagtcgacaactatgaagcgcgcgttagcattccttctatggccgtgtcatgcgac
tacgatcccctccgtcgccgggttaacgctgttttagagatggctgttgctaccatagat
actctggccgactcttatgaagtcaccggacagaatgaggtttctgtacaggcaattaga
gaagacacgaaagagatgatgatcgaatcgagtgcttaa
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