KEGG   Rhizoctonia solani: RhiXN_11931
Entry
RhiXN_11931       CDS       T09256                                 
Name
(RefSeq) exosome complex exonuclease DIS3/RRP44
  KO
K12585  exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
rsx  Rhizoctonia solani
Pathway
rsx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RhiXN_11931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsx03019]
    RhiXN_11931
Messenger RNA biogenesis [BR:rsx03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     RhiXN_11931
SSDB
Motif
Pfam: RNB Rrp44_S1 PIN_4 Rrp44_CSD1
Other DBs
NCBI-GeneID: 67034209
NCBI-ProteinID: XP_043186507
UniProt: A0A8H8P6W2
LinkDB
Position
15:complement(join(325917..326127,326177..326444,326501..326669,326721..326844,326899..327168,327217..327302,327374..327552,327605..327673,327724..327826,327895..328141,328195..328369,328421..328441,328495..328570,328620..328709,328760..328884,328949..329092,329149..329204,329281..329441,329493..329665,329812..329931,330899..330909,330951..331280,331343..331409,331844..332058,332118..332396,332530..332715,332769..332902))
AA seq 1362 aa
MSFTRRYYSTDRPPVSERNRPYVQLCRDYRLERGHRSPRLFSPLGAVGAGDKVAELVPAE
WIQEGEQWAGRVGRRYGLFGFEKTDKGKDDPPAEVAIVGDVANAVLAPNQDARVAAISVA
TKLDGSDVQALDVTSPYVMIDISYAIHKFQGQTFHSFLYSMHLFVPWSNLPLEFVHSPVS
RIKSVQLGLGSVDNIRTPSTTLVDRILLIYFSVTHPAFYHLLHLPRSVGLERDTPILPDS
DSPPFLLSQSQPINTPAHTPLLDSLPFPNPRQRAGVGEEDRVGLTRDDLWPYIRMIDIEM
FARGSSSLGTKLATFISSLAHLDSFALRLPTFRVFRDALTSDLRSAFSSCLPMRGIKTLC
VDAHSAWMVPLFPGATELVVWCWPKPGTCEDEERTDGWKMVFWEECVADHRHLDPYGRNC
DSEETVGGWPVFPEKVLQKDSEGKVLKVLRERYVRDDIQCGIESVNYYNFTEAHKSPLAP
AGDLTHTQFPNGHFIIPDTNVILHQMDLVESPLFNPPIILLQTVIDEVRHRSLPLHSRLK
GLIASEDKQIYVFYNEFHVQTAVVRQRDETPNDRNDRGIRVSASWYAKHYAAAWGQQASS
PEIVLLTDDAENRRRASKEGTRTLSVREYVTGTKNSAALLDLLAAESVGGEGDVEMKQGR
RKVLYEEYLPQATLVAGVKSGDLHQGYFNANSYNYLEGSVNVPGFPKPVLLLGREAMNRS
VQDAVIDADSAQRNDNPDDSASEGEHSDDEDAIQAKERQAARDAAARNPKEKQPTGRVVG
VMKRNWRAYVCHIDRSSLSTTSSILSVQTVFATPVDRALPRIRLRTRQAPELLGQKILVS
LTDGTLTPDTRTDTLFAHWAKQKVKRPNEREGDQWVVPPKESGRPEWRDREDLRDLIVCS
IDPPNCQDIDDALHARQLPNGNIEAGVHIADVSHFVHPDTPMDNEAASRGTTVYLVDKRI
DMLPSLLGTNLCSLRPYVERLAFSAIWTLSRSDSQNRHASKAAFTYEEAQIRKDDPTMSD
ELTQSIRLLNSLALKLKAKRMAAGALNLASPEVKIHLDSAESSDPIDVEQKELRETNSLV
EEFMLLANVSVARQIQESFPGTAVLRRHLPPPHSNFEKLQDLLMKLKGMTLDVSSSGALA
ASLDKCVDPNEPAFNTLVRIMATRCMLSAEYFCAGSVSRETFGHYGLASPIYTHFTSPIR
RYADVLAHRQLAASIGYTPLHATLHTKSHVEQVMSVINRRHRMAQMAGRASVEFYVGLAL
KARNLAQQDNEGVVEEAFVIRAFRNGLAVFVSKLGIEGLVTFKNEQEFDSESYSVTLPGP
SGTAKVAVFDRVRVKIRVEQDKNTLRGKVKMALVSPVSSVGL
NT seq 4089 nt   +upstreamnt  +downstreamnt
atgagtttcacgcgaagatactattcgacggatcggcctcctgtatccgagagaaacagg
ccgtatgttcagctttgcagagactatcggctcgaacggggacaccgctcccctcgctta
ttctctcctttgggggctgtgggcgcgggcgacaaggttgctgagctcgttccggccgag
tggatccaagagggagaacagtgggcaggaagagtgggcaggcgctatggcttgttcggg
ttcgaaaagacggacaagggtaaagacgatcccccagccgaggtggctattgtaggagat
gtggcaaacgctgttttggcacccaatcaggatgcgcgtgtggccgcgatctcggtcgcg
accaaactcgacggatccgatgtccaagcactagatgtgacgtctccctacgttatgatc
gacatatcctatgcaattcataaatttcaaggccagaccttccattcattcctttacagc
atgcatttattcgttccctggtcgaatctgccacttgaatttgttcattcaccagtcagc
cgaattaaatccgtccagttgggtcttggatccgttgataacatacgcaccccatcaact
acactcgtcgatcgcatcctgcttatttacttttcggttactcatcctgcattttatcat
ctcctccacctgccgcgttcggtcggtctcgagcgggatactccgattctaccggactcg
gactctccccccttcctcctctctcaatcacaacctataaacacccccgcacacacacct
cttttagactccttgccatttcccaatccccgtcagcgcgcgggagttggagaggaggat
cgagtgggtttgacgagggatgatttatggccgtatattcgaatgatcgacattgagatg
ttcgcccgcggatccagttcattgggcaccaaactcgcgacattcatctcttcccttgcc
cacctcgactcgttcgccctccgactccccacatttcgcgttttccgagacgcactcacg
tccgacttgcgatctgcgttttcgagttgtttgccgatgcggggtatcaagacgttgtgt
gtcgatgcgcattcggcgtggatggtccctctgtttccgggcgcgaccgagttggtcgtg
tggtgttggccgaaaccggggacgtgtgaggatgaggagcgtacggacgggtggaagatg
gttttttgggaagaatgtgtggctgaccaccgccacttggacccgtatggccgaaattgt
gattcggaagagaccgttggcggatggccagtcttcccagagaaagttttacaaaaagac
agcgagggaaaagtcctcaaagtcttgagagaacgatacgttcgggatgatatccaatgc
ggaattgaaagtgtcaattattataattttaccgaggctcacaagtcgcccttggctcct
gccggagacttgacgcatacccagtttccgaatgggcattttatcattcccgatacgaat
gtaattctacaccagatggacctggtcgaatctccattatttaaccccccgatcatactc
ctccaaacggtcattgacgaagtccgacaccgatcgttgcctctgcattcaagactcaag
ggtttgatcgcgagcgaagataaacagatttacgtgttttacaacgagtttcatgtgcag
acggccgtggtgaggcagcgcgacgagactccgaacgatcggaacgaccgagggatccgg
gtgtctgcttcttggtatgcgaaacattatgctgctgcgtggggtcaacaggcttcatcg
cccgagatcgttctcttgacggacgacgctgagaacaggcggagagcttcgaaagagggt
actaggactttgtcagttcgggaatatgtaaccgggacgaaaaattccgctgcgttgttg
gatttgttggccgcggagagtgtggggggcgaaggagacgtagagatgaaacaagggcga
agaaaggtactttatgaagagtatcttccgcaagcaactctcgttgcgggtgtcaagagc
ggtgatttacaccaaggctattttaatgcaaactcgtacaattacctcgaaggttcggtc
aatgtcccagggttcccgaaaccagttttactcttggggcgggaagcaatgaatcgatct
gtccaggatgcagtcattgatgctgattctgctcagcggaatgataatcctgacgattcg
gcgagtgaaggcgagcattcagacgatgaagatgctatccaggccaaggaacgccaagcg
gcccgggacgccgcggctcgaaaccccaaggagaagcagccaacgggcagagtggtaggt
gtaatgaagagaaactggagagcgtacgtatgccacatagaccgatcatcactctccact
acttcctcaatcctctctgtccaaaccgtctttgcaacacccgtcgatcgagcccttccg
cgaattcgcctacggactcgacaagcccctgagcttcttggccaaaaaatcctagtgtcc
ttgacagatgggaccctcactcccgatacccggacggacactttgttcgcgcattgggca
aagcagaaagtaaagaggccgaacgagagagagggagaccagtgggtcgtacctcccaag
gaaagcggtcgacctgagtggagggatagggaagatctgcgggatttgattgtttgtagt
attgacccacctaactgccaggatatcgatgatgcccttcatgccaggcagcttccgaat
ggaaacattgaggcgggtgttcacattgccgacgtttcgcactttgtacaccctgatact
ccgatggacaacgaagcagcatctagaggaacgaccgtctatttggtcgataaacgaatt
gacatgttgcccagtcttttgggcactaacctctgttcactgcgtccatatgtagagaga
ttggccttctccgctatctggacattgtcaaggtccgattcacaaaatcgtcatgcttcc
aaggcagcgttcacatatgaggaagctcagatccgaaaggacgaccctaccatgagcgac
gaattgacccaatccatccgcctgctcaactccctggcactcaagctcaaagctaaacga
atggcggctggtgcgctgaaccttgcttctcctgaggtcaagattcacctcgacagtgct
gaatcttcggatcccatcgatgtagaacaaaaggagcttcgagagacaaattcgttggtc
gaagagtttatgcttctcgccaacgtgagcgttgctcgacagattcaggaatcgttcccc
gggaccgccgtactgaggcggcatttgccaccaccacacagcaactttgagaaattgcaa
gacttactcatgaagttgaaggggatgaccttggatgtctctagttcaggggctttagcc
gcgtccttggataaatgtgtggatccgaacgaaccagcatttaatacacttgttcgtatc
atggccacccgctgcatgttgtcagcagagtacttctgtgctgggagcgtatctagggaa
acctttggtcattacgggttggcgagtccgatttatactcatttcaccagccctatcagg
cgatatgccgacgtacttgcccatagacaacttgcagcatcgattggatacacacctttg
cacgcgacgctacataccaaatcccacgtagaacaagttatgtctgtaattaatcgtcgt
catcgtatggcacaaatggcagggcgggccagtgtggagttctatgtgggacttgcgctc
aaagcgaggaaccttgcccagcaagataatgaaggagtagtggaagaagcttttgtgatc
cgagcattcaggaatggtctcgcggtatttgtttccaagttggggatcgaaggacttgtc
acattcaagaacgagcaagaattcgattctgagtcttattcggtcactctccctggtcca
tctggcactgccaaagttgctgtatttgaccgagtccgggtcaaaattcgcgtagagcaa
gacaaaaacacgctgcggggcaaagtcaaaatggccttggtctctcctgttagcagtgtt
gggctttag

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