Ralstonia solanacearum UY031: RSUY_12520
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Entry
RSUY_12520 CDS
T06155
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rsy
Ralstonia solanacearum UY031
Pathway
rsy03030
DNA replication
rsy03430
Mismatch repair
rsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSUY_12520 (dnaE)
03430 Mismatch repair
RSUY_12520 (dnaE)
03440 Homologous recombination
RSUY_12520 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsy03032
]
RSUY_12520 (dnaE)
03400 DNA repair and recombination proteins [BR:
rsy03400
]
RSUY_12520 (dnaE)
Enzymes [BR:
rsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RSUY_12520 (dnaE)
DNA replication proteins [BR:
rsy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RSUY_12520 (dnaE)
DNA repair and recombination proteins [BR:
rsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RSUY_12520 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Ski2_N
Motif
Other DBs
NCBI-ProteinID:
ALF87619
LinkDB
All DBs
Position
1350895..1354425
Genome browser
AA seq
1176 aa
AA seq
DB search
MNSPRFVHLRLHSEYSIVDGNVRLDEAVKAAAADGMGALALTDLANAFGLVRFYKEARGK
GVKPVVGADVWITNHDERDKPSRLLLLVRNKQGYLNLCTLLARAWLSNQHRGRAEIAPEW
FDEPGVEDAPLSTGLLALSGAMGGDVGMALANGNEALARKLATHWSRVFPQAFYIELQRA
GQAGTEAYIQQAVKLAASMQLPVVATHPVQFMTQDDFTAHEARVCIAEGDLLANPRRTRR
FSTEQYFKKQDEMCALFADIPSALANTVQIAQRCNLTLELGKPKLPLFPTPDGMSLDDYL
VHLAKDGLEKRMEVLFPDAAVREAKRPEYYARLEFETGTIIKMGFPGYFLIVADFINWAK
NNGVPVGPGRGSGAGSLVAYALGITDLDPLKYNLLFERFLNPERVSMPDFDIDFCQHGRD
RVIHYVKEKYGKDAVSQIATFGTMAAKAAVRDVGRVLDLGYNFVDGVAKLIPFKPGKLVT
LEEAKKEEPLLAEREANEEEVKQLLELAQRVEGMTRNVGMHAGGVLIAPGKLTDFCPLYT
QGGEDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRMLDPSKADWNCSHIPL
NDKPAFDILKAANTVAVFQLESRGMQGMLKDAKPDRFEDIIALVALYRPGPMDLIPSFCA
RKHGREKVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIVGGYSLGGADLLRRAMGKKKAE
EMAEHRELFRGGAAKDGLSTEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHH
PAEFMAANMSLAMDDTDKVKILYDDAAGKNGLKVLPPDINASLYRFTPTDAKTIRYGLGG
VKGSGQGAIEDILRAREDGPFKDLFDFCERVDRRQVNRRTIEALVRAGAFDSLNDNRAQL
LVSIGLAMEAAEQKAAAANQVSLFDLMSGEDAEEHRPELLDEAPWSTKRKLQEEKQALGF
YLSGHLFDECRDEVRRFARTTLADLAREVNGNGNGNGNGGGYGNRDARNKTVSGVIVGLR
TQMTQRGKMIVVMLDDGSQSEATEVTVFNELFDANRGLFKEDEVLIVQGNARHDTFTGGV
RMTAESVMDLTQARSRYAEALGLVLRDDASAVRLRELLTPHLATQASGVRVHISYAANGA
CCKAVLGEQWQVTPSDEVLASFRSALSNENVYMIYG
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgccgcgctttgtccatctccgtctccattccgaatactccatcgtcgacggc
aacgtccgtctggacgaggccgtcaaggccgccgccgccgatggcatgggcgccctggcg
ctgaccgacctcgccaacgccttcggcctggtgcgcttctacaaggaagcgcgcggcaag
ggcgtcaagcccgtcgtcggcgccgacgtgtggatcaccaatcacgatgagcgcgacaag
cccagccgcctgctgctgctggtgcgcaacaagcagggctacctgaacctgtgcacgcta
ctggcgcgggcgtggctgtcgaaccagcatcgcggccgcgcggagatcgctcccgagtgg
ttcgacgagcccggcgtggaagacgcgccgctgtccaccggcctgctggcattgtccggc
gcgatgggcggcgatgtcggcatggcgctggccaacggcaacgaggcgctggcgcgcaag
ctggcgacgcactggtcgcgcgtgtttccgcaggcgttctacatcgagctgcagcgcgcc
gggcaggccggcaccgaggcctacatccagcaggccgtgaagctggccgcgtcgatgcag
ttgccggtggtcgcaacgcatccggtgcagttcatgacgcaggacgacttcaccgcccac
gaggcacgcgtctgcatcgccgagggcgatctgctggccaacccgcgccgcacccggcgc
ttcagcaccgagcagtatttcaagaagcaggacgagatgtgcgcgctgttcgccgacatc
ccgtccgcgctggccaacacggtgcagatcgcgcagcgctgcaacctgacgctggaactg
ggcaagcccaagctgccgctgttccccacgcccgacggcatgtcgctggacgactacctc
gtccacctggccaaggacgggctggaaaagcgcatggaagtgctgttccccgacgcggcc
gtgcgcgaggccaagcggcccgagtactatgcacggctggagttcgagaccggcaccatc
atcaagatgggcttcccgggctacttcctgatcgtggcggacttcatcaactgggccaag
aacaacggcgtgccggtggggccgggccggggctcgggcgcgggctcgctggtggcgtat
gcgctgggcatcaccgatctggacccgctcaagtacaacctgctgttcgagcgcttcctg
aacccggaacgcgtgtcgatgcccgacttcgatatcgacttctgccagcacggccgcgac
cgcgtcatccactacgtgaaggagaagtacggcaaggacgccgtctcgcagatcgccacc
ttcggcaccatggccgccaaggccgccgtgcgcgacgtgggccgcgtgctggacctgggc
tacaacttcgtcgacggcgtggccaagctgatcccgttcaagccgggcaagctcgtcacg
ctggaggaagccaagaaggaagagccgctgctggccgagcgcgaggccaatgaagaagaa
gtcaagcagctgctcgaacttgcccagcgtgtcgaaggcatgacgcgcaacgtcggtatg
cacgcgggcggggtgctgatcgcgccgggcaagctgaccgatttctgtccgctctacacg
cagggcggtgaggatgccggcgtcgtcagccagtacgacaaggacgacgtggaagccgtc
ggcctggtcaagttcgacttcttgggcctgaccacgctcacgatcctggattgggccgag
cgctatatccgcatgctcgatccgtccaaggcggactggaactgcagccacattccgctg
aacgacaaaccggcgttcgacatcctcaaggccgccaatacggttgccgtgttccagctg
gaaagtcgcggcatgcagggcatgctgaaggacgccaagcccgatcgctttgaagacatc
atcgccctggtggctttgtaccgcccgggcccgatggacctgatccccagcttctgcgcc
cgtaagcacggccgcgagaaggtggagtaccccgacccgcgcgtcgagccggtgctcaag
gagacctacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcgtcggc
ggctactcgctcggcggcgccgacttgctgcgccgtgcgatgggcaagaagaaggccgaa
gagatggccgagcaccgcgagctgttccgcggcggcgcggccaaggacggtctgtccacc
gagaaggccgacgagatcttcgacctgatggagaagttcgcgggctacggcttcaacaag
tcgcacgcggcggcgtatgcgctgctggcgtactacaccgcatggctcaaggcgcatcac
ccggccgaattcatggcagccaacatgtcgctggccatggatgacaccgacaaggtcaag
atcctctacgacgacgcggccggcaagaatggcctcaaggtgctgccgcccgacatcaac
gccagcctgtaccgcttcacgcccaccgacgccaagaccatccgctatggcctgggcggc
gtgaagggcagcgggcagggcgccatcgaagacatcctgcgcgcgcgcgaagacggtccg
ttcaaggacctgttcgacttctgcgagcgcgtcgatcgccgccaggtcaaccgccgcact
atcgaagcgctggtgcgggccggcgccttcgacagcctcaacgacaaccgcgcgcagttg
ctggtctcgatcggcctggcgatggaggcggcggagcagaaggcggcagcggccaaccag
gtgtcgctgttcgacctgatgagcggcgaggatgccgaggagcatcgccccgaactgctc
gacgaggcaccctggagcaccaagcgcaagttgcaggaagagaagcaggcgctgggcttc
tacctgtcgggccacctcttcgacgaatgccgcgacgaggttcgccgctttgcccggacg
accctcgccgacctggcccgggaggtcaacggcaatggcaacggcaacggtaatggcggt
ggctatggcaatcgcgacgcgcgcaacaagaccgtgtccggcgtgatcgtcggcctgcgc
acgcagatgacccagcgcggcaagatgatcgtcgtcatgctcgatgacggctcgcagagc
gaggccaccgaagtgacggtcttcaacgagctgttcgatgccaaccgcgggctgttcaag
gaggacgaagtgctgatcgtgcagggcaacgcgcggcacgacaccttcaccggcggggtg
cggatgacggccgagtccgtgatggacctgacccaggcgcgctcgcgctatgccgaggcg
ctgggcctggtgctgcgcgacgacgcctccgccgtgcggctgcgcgagctgctgacgccg
cacctggcgacccaggcgtccggcgtgcgcgtgcatatcagctacgccgccaacggcgcg
tgctgcaaggccgtgctcggcgagcaatggcaggtgaccccgtcggacgaggtgctggcc
agcttccgctcggcgctgtcgaacgagaacgtctacatgatctacggctga
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integrated database retrieval system
