Ralstonia solanacearum UY031: RSUY_14590
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Entry
RSUY_14590 CDS
T06155
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rsy
Ralstonia solanacearum UY031
Pathway
rsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSUY_14590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsy03019
]
RSUY_14590
03009 Ribosome biogenesis [BR:
rsy03009
]
RSUY_14590
Enzymes [BR:
rsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RSUY_14590
Messenger RNA biogenesis [BR:
rsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RSUY_14590
Ribosome biogenesis [BR:
rsy03009
]
Prokaryotic type
rRNA processing factors
RSUY_14590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ALF87817
LinkDB
All DBs
Position
complement(1565235..1568291)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEERHGFLPFKEVARAYFKDGVDVRTARIQDALTEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMAQLQVPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWKAVDGAAVDNKAPLLIYLESSLVIRAIRDYFQPDIGEILIDTDDIYDQAR
AFMSVVMPDNMNRVKKYRDDVPLFSRFQIEHQIESAYSRMVMLPSGGAIVIDHTEALVAV
DVNSARATKGADIEETALRTNLEAADEIARQLRLRDLGGLIVIDFIDMESSKAQKDVETR
LKDALRHDRARVQMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQ
VLRIIQEEAMKENTAAIHCQVPVEVAAFLLNEKRPDINLIETRFKVNVLLIPNKHLETPH
YKLERLRHDDPRLDDNKASYKMAEEAAKELEADTAYSTRKEAVKPRQEAAVKGITPEQPA
PVSVPRAERPARAEAAPAAAPQASAPVPAQGGFMSWLKSLFGGKPAEPVVAAPVETPKRA
EDGSRRDRGNRQERGGRSGQRGERGERGERQGQQGGRDGQRQGRDGSRNEAREGQAQREG
QREGQRESQRGNRERNRQPAETTDRETVEARQPQQGQEARDGQGRRERSQERRERAPREG
REGGRESREGRESREPREGRDSRERDAQQAKEAASAAAPAAVADLIDPTAAAQVPQALVD
ATMPAEAITTEGAAPGTEGTGEGEERRRRGRRGRNRYRRDREGAEGVRAEDETEDEGETA
AAEPATATQPAVEAVQPAAPVVHETVTEPVQTPAPAAIETAVPAVQTPVHADEAETVAPV
PAAQPAAQPAEPVAAVAATPATEPAADTIVTASAEVPAPVSTVAQVSPLPIGTLQAVVAD
AGMTWVHTDSQKLQAAQEEAARTVTPPRVPRERKPLPPIQQGPMVLVETNRPAGGTDQ
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaatgcgacgcagcaagaagagttgcgcgtcgccattgtcgat
ggccagaaactgatcgacatcgacatcgagaccgccggccgcgaacagcgcaaaggcaat
atctacaagggtgtcatcacccgcatcgaaccgtcgctggaggcctgcttcgtcaactac
ggcgaagaacggcacggtttcctccccttcaaggaagtcgcccgcgcctacttcaaggac
ggcgtggatgtgcgcaccgcccgcatccaggacgcgctcaccgaaggccaggaactgatc
gtccaggtggaaaaggaagagcgcggcaacaagggcgcggcgctgaccaccttcatctcg
ctggccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgaagaccgccaggaactgcgcgaaaccatggcgcagctgcaggtcccg
gaaggcatgagcatcattgcccgcactgccggcatcggccgctcggccgaagagctgcag
tgggacctgaactacctgatgcagctgtggaaggcggtcgacggcgccgccgtcgacaac
aaggccccgctgctgatctatctcgaatccagcctggtgatccgcgccatccgcgattac
ttccagccggacatcggtgagatcctgatcgataccgacgacatctacgatcaggcccgc
gccttcatgagcgtggtgatgcccgacaacatgaatcgggtgaagaagtatcgcgacgac
gttcccctgttctcgcgcttccagatcgaacaccagatcgaatcggcctattcgcgcatg
gtgatgctgccctcgggcggcgctatcgtgatcgaccacaccgaggcgctggtcgccgtc
gacgtgaactcggcgcgcgccaccaagggtgcggacatcgaggaaaccgcgctgcgcacc
aacctcgaagccgccgacgagatcgcccgccagttgcgcctgcgcgacctcggcggcctg
atcgtgatcgacttcatcgacatggagtcgagcaaggcccagaaggacgtcgagacccgc
ctgaaggacgcgctgcgccacgaccgcgcccgcgtgcagatgggcaagatcagtcgcttc
ggcttgatggagctgtcgcgccagcgcctgcgtccgtcgctgtcggaaggctcgcatgtc
acctgcccgcgctgtaacggcacgggccacatccgcgataccgaatcgtccgccctgcag
gtgctgcgcatcatccaggaagaggcgatgaaggaaaacaccgccgcgatccactgccag
gtgccggtggaagtggctgcgttcctgctcaacgagaagcgcccggacatcaacctgatc
gagacccgcttcaaggtcaatgtgctgctgattccgaacaagcacctggaaacgccgcac
tacaaactcgagcgcctgcgtcacgacgatccgcgcctggacgacaacaaggccagctac
aagatggccgaggaagccgccaaggaactggaagccgacaccgcctacagcacccgcaag
gaagccgtcaagccgcgccaggaggcggcggtcaagggcatcacgccggaacagccggcc
ccggtatcggtgccgcgcgccgagcgtccggcccgtgccgaggccgctccggccgcagca
ccgcaggcgtcggccccggtgcctgcacaaggcgggttcatgtcgtggctcaagtcgctg
tttggcggcaagccggccgagccggtggtcgccgcccccgtcgagacgcccaagcgcgct
gaagacggcagccgccgcgaccgtggcaaccgccaggaacgtggcggccgcagcggtcag
cgcggggaacgcggcgagcgtggcgaacgccagggccagcaaggcggccgcgacggccag
cgccagggccgcgacggcagccgcaacgaagcccgcgaaggccaagcccagcgtgaaggt
cagcgtgagggtcaacgcgaaagccagcgcggcaaccgcgagcgcaaccgccagccagcc
gagaccaccgaccgcgaaacggtcgaggcgcgccagccgcagcaaggccaggaggcacgc
gacggccagggtcgccgcgaacgcagccaggaacgccgcgaacgcgcaccgcgcgaaggt
cgcgaaggtggacgggaaagccgcgaaggacgtgagagccgcgaaccgcgcgaaggccgc
gacagccgtgagcgcgatgcgcagcaggccaaggaagccgccagcgccgcagccccggcc
gcagtggcagacctgatcgatccgaccgctgccgcccaggtgccgcaagcgctggtggac
gcgaccatgcccgccgaggcaatcaccaccgagggtgcagcgcctggcacggaaggcacc
ggtgagggcgaagaacgccgccgccgcggtcgccgtggccgcaatcgctatcgccgtgac
cgtgagggcgcggaaggcgtgcgcgccgaggatgaaaccgaggacgaaggtgaaaccgct
gccgctgagccggcaacggcaacccagcctgcggtggaagccgtccagccggcagccccg
gtcgtacacgaaaccgtgacggagccggtgcagacgcccgccccggcagcgatcgaaacg
gctgtgccggccgtgcagacgccggtgcatgcagatgaggccgagaccgtggcacccgtt
ccggcggcgcagcctgccgcacaaccggccgagccggtcgctgccgtggctgcaacgcct
gcaacggaaccggccgccgacaccatcgtgacggcctctgccgaagtgccggcaccggtc
agcacggtggcccaggtttcgccgctgccgatcgggacgctgcaggccgtggtggccgac
gccggcatgacgtgggtccacaccgactcgcagaagctgcaggcggcgcaggaagaagcg
gcccgcaccgtcacgccgccgcgcgtgccgcgtgagcgcaagcccctgccgccgatccag
cagggaccgatggtcctggtcgaaaccaaccgtccggcgggcggcaccgaccagtaa
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