Ralstonia solanacearum UY031: RSUY_16850
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Entry
RSUY_16850 CDS
T06155
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
rsy
Ralstonia solanacearum UY031
Brite
KEGG Orthology (KO) [BR:
rsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsy03019
]
RSUY_16850
Enzymes [BR:
rsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RSUY_16850
Messenger RNA biogenesis [BR:
rsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RSUY_16850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
HA2_C
OB_NTP_bind
Helicase_C
HA2_N
DEAD
AAA_19
T2SSE
AAA_22
nSTAND3
NACHT
AAA_25
AAA_30
PhoH
Motif
Other DBs
NCBI-ProteinID:
ALF88027
LinkDB
All DBs
Position
1796696..1800691
Genome browser
AA seq
1331 aa
AA seq
DB search
MSDSHVSPPSAAPSRPSPNDASRPARQPGPADAGGRRPRRQKPTPEALAAALEARRARAN
AVPPIAFPEALPVSARRDEIAQAIAAHQVVIVSGETGSGKTTQLPKICLSIGRGIGAGGT
GLIGHTQPRRIAATSTAKRIAQEIGSPLGEHVGYQVRFNDTLSAGASVKLMTDGILLAET
QNDPLLRAYDTIIIDEAHERSLNIDFLIGYLKQLLPRRPDLKVIITSATIDAQRFAEHFA
GLNGQTGPAPVIEVSGRLYPVEVRYRPVQRDEKDKERDLYDGIVDAVDELAREGAGDVLI
FLPGEREIREAAEALRKHHPAHTEILPLFARLSVQEQERVFRPSNARRIVLATNVAETSL
TVPGIRYVVDTGLARVKRYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYEEA
DFIARPRFTDPEILRSSLAAVILRMKALRLTDVEQFPFIEPPLGRAIADGYQLLQELGAV
DDENALTPLGKQVARLPLDPRVARMILAGRDHQCLREMLIIASALSVQDPRERPQELQQQ
ADQAHRQFADEKSEFLGWVKLWKWFEEAVAHKKSNKQLQDQCRSHFLSHLRLREWRDVHS
QLHTTVAEQGWKLNESDPTYEQLHLALLTGLLGNIGVRIEEADGKGREYLGARGIKFFLW
PGSVIARKAGKWVVGGELIETSRLFGRTLARIEPEWVEKVGAHLLKVSWSDPHWEKKAGQ
VMAFERGTLYGLPVYQQRRVHFGPMQPKEAREMFIRRALVDGEFETRLPFFAHNQRLVRE
IENLEHKSRRQDVLVDDELIHAFYDSQLPADIHNAVALEHWYAEAAKASQKLLYLNRDDL
MRHEAAGITTDLFPKTLPIAGIDMGLTYHFEPGSPRDGVTLTVPLYALNQVPAQRAEWLV
PGMLKEKVHLLLKSLPQKLRRHCVPLPDYAAGFVSRVRLGDGDLLDRLIADVREQTSTAL
KRADFKLETLPAHHFMNFKVIDEHGRQLDMGRNLAQLRAELGGRAQQTFQSIAAKDAAVA
GAQGESTGAKPGKAGKSEAPANAALYSGLTTWNFGALPELLEVRKGSQTLFGYPALVDGG
DHCDVEVFDDPAEAARIHRLGLRRLFGLQLREPLKYLEKNIPGLSQMAIQFMNLGTQDEL
RNQILDATLERACLQDPLPTDDATFGARKDESRARLTLLAQEIARLAGAILTEYAQLPRK
LQIAKPFGAAYADIDAQLKALMHKRFIEATPYAQLAHFPRYLKGIALRIDKLKADPTRDA
QRMQEMAPLLQQYQRAEKQLRVQGQGGTDPRMEEFRWMLEELRIALFAQELRTPVPMSVK
RLQKVWESMQR
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattcccacgtctcgccgccgtctgcggcaccctcccgaccctccccgaacgac
gccagccggcccgcgcgccaaccgggcccggcggacgccggcggccgtcgcccgcgccgg
cagaagccgacgccggaagcgctcgccgccgcgctggaggcccgccgcgcacgcgccaac
gcggtgccgccgatcgcctttcccgaagcgctgccggtttcggcccggcgcgacgagatt
gcccaggccatcgccgcgcaccaggtggtgatcgtcagcggcgagaccggctcgggcaag
accacgcagttgcccaagatctgcctgtcgatcgggcggggcatcggcgcgggcggcacc
gggctgatcggccacacgcagccgcggcgcatcgccgccacctccaccgccaagcgcatc
gcccaggagatcggctcgccgctgggcgagcacgtcggctaccaggtgcgcttcaacgac
acgctgtcggccggcgcctcggtcaagctgatgaccgacggcatcctgctggccgagacg
cagaacgatccgctgctgcgcgcctacgacacgatcatcatcgacgaggcgcacgagcgc
agcctcaacatcgatttcctgatcggttacctcaagcagttgctgccgcgccggcccgac
ctgaaggtcatcatcacctcggccaccatcgacgcgcagcgctttgccgagcactttgcc
gggctgaatggtcagacagggccggcaccggtgatcgaggtgagcggccggctgtacccg
gttgaggtgcgctatcgccccgtccagcgcgacgagaaggacaaggagcgcgacctctac
gacggcatcgtcgatgcggtcgacgagctggcgcgcgaaggcgccggcgatgtgctgatc
ttcctgccgggcgagcgcgagattcgcgaggcggccgaggcgctgcgcaagcaccatccg
gcgcacaccgagatcctgccgctgttcgcgcggctctcggtgcaggagcaggagcgggtg
ttccgcccgtccaacgcgcgccgcatcgtgctggccaccaacgtggccgagacctcgctg
acggtgccgggcatccgctacgtggtcgacacggggctggcgcgcgtcaagcgctattcg
taccgcaacaaggtcgagcagttgcagatcgagccggtctcgcaggccgccgccaaccag
cgcgcgggccgctgcggccgggtggccgacggcgtgtgcatccgcctgtatgaagaggcg
gatttcatcgcacggccgcgcttcaccgatccggaaatcctgcgttcgtcgctggccgcg
gtgattctgcgcatgaaggcgttgcggctgaccgacgtcgagcagtttcccttcatcgaa
ccgccgctgggccgcgcgattgccgacggctaccagctcctgcaagagctgggcgccgtc
gatgacgagaacgcgctcacgccgctgggcaagcaggtcgcccgcctgccgctggacccg
cgcgtggcgcgcatgatcctggccggccgcgaccaccagtgcctgcgcgaaatgctcatc
atcgccagcgccctgtccgtgcaggacccgcgcgagcgcccgcaggagctgcagcagcag
gccgaccaggcacatcgccagttcgccgacgagaaatccgaattcctcggttgggtcaag
ctgtggaagtggttcgaagaggcggtggcgcacaagaaatcgaacaagcagttgcaggac
cagtgccgatcgcatttcctgtcgcacctgcggctgcgcgagtggcgcgacgtgcattcg
caactgcacaccacggtggcggagcagggctggaagctcaacgaatccgatccgacctac
gagcagttgcatctggcgctgctgacgggcctgctcggcaacatcggtgtgcgcatcgaa
gaagccgacggcaagggacgcgaatacctcggcgcgcgcggcatcaagttcttcctgtgg
ccgggctcggtcatcgcgcgcaaggccggcaagtgggtcgtgggcggcgagctgatcgag
accagccgcctgttcggccgcacgctggcgcgcatcgagccggagtgggtggagaaggtc
ggcgcgcacctgctgaaggtgtcgtggagcgacccccactgggaaaagaaggccggccag
gtcatggccttcgagcgcggcacgctctacggcctgccggtctaccagcagcgccgcgtg
catttcgggccgatgcagcccaaggaggcgcgcgagatgtttatccgccgcgcgctggtc
gacggcgagttcgagacacgcctgccgttcttcgcgcacaaccagcggctggtgcgcgag
atcgagaacctcgagcacaagtcccgccgccaggatgtgctggtggacgacgaactgatc
cacgcgttctacgacagccagcttccggccgacatccataacgccgtcgccctcgagcac
tggtacgccgaggccgccaaggccagccagaagctgctgtacctgaaccgcgacgatctg
atgcgccacgaggcggccggcatcaccaccgacctgttccccaagacgctgccgatcgcc
ggcatcgacatgggcctgacgtatcacttcgagcccggtagcccgcgcgacggcgtgacg
ctgacggtgccgctctacgcactgaaccaggtgcccgcgcagcgcgccgaatggctggtg
cccggcatgctcaaggagaaggtgcacctgctgctcaagagcctgccgcagaagctgcgc
cgccactgcgtgccgctgccggactatgcggccggcttcgtctcgcgcgtgcggctcggc
gacggcgatctgctcgaccgcctgatcgccgatgtgcgcgagcagactagtacggcgctc
aagcgggcggacttcaagctcgaaacgctgcccgcgcatcacttcatgaatttcaaggtg
atcgacgagcacggccggcaactggacatgggccgcaacctggcccagttgcgtgccgag
ctgggcggacgcgcgcagcagactttccagtcgatcgcggccaaggatgcggccgtggcc
ggcgcgcagggcgagagcactggcgccaagccgggcaaggccggcaagagcgaggcaccg
gctaatgccgcgctgtactcgggcctgaccacctggaatttcggcgcactgcccgagctg
ctggaagtccgcaagggcagccagacgctgttcggctacccggcgctcgtcgacggcggc
gaccactgcgacgtggaagtcttcgacgacccggccgaggccgcgcgcatccaccgcctg
ggtctgcgccgtctgtttgggctgcagttgcgcgagccgctgaagtacctggaaaagaat
attcccggcctgtcgcagatggcgatccagttcatgaacctggggacgcaggacgaactg
cgcaaccagatcctggacgccacgctggagcgtgcctgcctgcaggatccgctgcccacc
gacgacgctacgttcggcgcccgcaaggacgagagtcgcgcgcgcctgacgctgctggcg
caggagatcgcccggctggccggcgcgatcctgaccgaatacgcgcagttgccacgcaag
ctgcagatcgccaagccgttcggcgccgcgtatgccgacatcgatgcgcaactgaaggcg
ctgatgcacaagcgcttcatcgaggcgacgccgtacgcgcagctcgcgcacttcccgcgc
tacctgaagggcatcgccctgcgcatcgacaagctcaaggccgacccgacgcgcgacgcc
cagcgcatgcaggagatggcgccgctgctccagcaataccagcgcgccgagaagcagctg
cgtgtgcaggggcagggcggcaccgatccgcgcatggaggagttccgctggatgctggaa
gagctgcgcatcgcactgttcgcgcaggagctgcgcacgccggtgccgatgtcggtgaag
cggctgcagaaggtgtgggagtcgatgcagcgatag
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