Ralstonia solanacearum UY031: RSUY_30540
Help
Entry
RSUY_30540 CDS
T06155
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
rsy
Ralstonia solanacearum UY031
Brite
KEGG Orthology (KO) [BR:
rsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rsy03016
]
RSUY_30540 (rtcB_1)
Enzymes [BR:
rsy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
RSUY_30540 (rtcB_1)
Transfer RNA biogenesis [BR:
rsy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
RSUY_30540 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
RSUY_30540 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ALF89370
LinkDB
All DBs
Position
complement(3240115..3241335)
Genome browser
AA seq
406 aa
AA seq
DB search
MSNTHYNTLHVDQGVDIKLWTQGVPIEDEARKQLMNTAKMPFIFKHMAVMPDVHLGKGST
IGSVIPTRGAIIPAAVGVDIGCGMMAARTTLTAADLPDNLHGLRSAIEAAVPHGRTPGAR
DKGAWSTPPATVDAMWAELVEGFNRITDKYPRLKKTNHHKHLGTLGTGNHFIEVCLDEEN
RVWFMLHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRDLAYFEEGSQHFDDYVEAVGW
AQDYARRNRATMMQNVIAAARKVIAKPFAADVEAVNCHHNYVQRETHFGHDVLVTRKGAV
SAQKGQLGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTQAKKRYTVDDQVRATA
HVECRKDVDVIDEIPMAYKDIDAVMAAQADLVEIVHTLRQVVCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacacccactacaacaccctccacgtcgaccagggcgtcgacatcaagctgtgg
acccaaggcgtgccgatcgaagacgaggcccgcaagcaactgatgaacacggcgaagatg
ccgttcatcttcaagcacatggcggtgatgccggacgtgcacctgggcaaggggtcgacc
atcggcagcgtgatcccgacgcggggcgcgatcatcccggcggcggtgggcgtggacatc
ggctgcggcatgatggccgcccgcaccacgctcacggcggcggatctgccggacaacctg
cacggcctgcgcagcgccatcgaggcggcggtgccgcacggccgtacgccgggcgcgcgc
gacaagggcgcgtggagcacgccgccggccacggtcgatgcgatgtgggcggagctggtc
gagggcttcaatcggatcaccgacaagtatccgcggctcaagaaaacgaaccaccacaag
cacctcggaacgctcggtaccggcaaccacttcatcgaggtctgcctggatgaagagaac
cgcgtctggttcatgctgcattccggctcgcgcggcgtgggcaacgcgatcggcaacctg
ttcatcgaactggcgcaggccgatatgcggcagcacatcgccaacctgccggaccgcgac
ctggcgtatttcgaggaaggcagccagcacttcgacgactacgtggaggcggtgggctgg
gcgcaggactacgcgcgccgcaaccgcgccacgatgatgcagaacgtgatcgcggccgcg
cgcaaggtcatcgccaagccgttcgcggccgacgtggaagcggtgaactgccaccacaac
tacgtgcagcgcgagacccacttcggccacgatgtgctggtgacgcgcaagggcgcggtg
tcggcgcagaaggggcagctcggcatcattccgggttcgatgggggcgaagagcttcatc
gtgcgcgggctgggcaacgaagaggcgttctgctcgtgcagccacggcgcgggccgcacc
atgagccgcacgcaggccaagaagcgctacacggtggacgaccaggtccgcgccaccgcg
cacgtggagtgccgcaaggatgtcgacgtcatcgatgaaatcccgatggcgtacaaggac
atcgacgccgtgatggccgcgcaggcggacctggtggagatcgtccatacgctgcggcag
gtggtgtgcgtgaaggggtag
DBGET
integrated database retrieval system
