Raphanus sativus (radish): 108805163
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Entry
108805163 CDS
T06014
Name
(RefSeq) prolycopene isomerase, chloroplastic isoform X1
KO
K09835
prolycopene isomerase [EC:
5.2.1.13
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00906
Carotenoid biosynthesis
rsz01100
Metabolic pathways
rsz01110
Biosynthesis of secondary metabolites
Module
rsz_M00097
beta-Carotene biosynthesis, GGAP => beta-carotene
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
108805163
Enzymes [BR:
rsz01000
]
5. Isomerases
5.2 cis-trans-Isomerases
5.2.1 cis-trans Isomerases (only sub-subclass identified to date)
5.2.1.13 prolycopene isomerase
108805163
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GFIT
Motif
Pfam:
Amino_oxidase
NAD_binding_8
DAO
FAD_binding_2
GDI
FAD_oxidored
Thi4
HI0933_like
Pyr_redox_2
GIDA
GMC_oxred_N
Motif
Other DBs
NCBI-GeneID:
108805163
NCBI-ProteinID:
XP_018432638
UniProt:
A0A6J0JAE4
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Position
5:complement(22006229..22009496)
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AA seq
593 aa
AA seq
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MNLCLHNPLTCVDRSSSFFSASKTSNHKLGTLKLGFLKHRKKNHTVTVRSVSSTSVEERT
KKRDERSGGGGEGQVYDAIVIGSGIGGLVAATQLSVKEAKVLVLEKYLIPGGSSGYYERD
GYTFDVGSSVMFGFSDKGNLNLITQALKAVGREMEVIPDPTTVHFHLPDDLSVQVHRGYD
EFVNELVSKFPHEKDGILGFYGDCWKIFNSLNSLELKSLEEPIYLFGQFFQKPLECLTLA
YYLPQNAGDIARKYIKDPQLLSFIDAECFIVSTVNALQTPMINASMVLCDRHYGGINYPV
GGVGGIARSLAEGLVDQGSEILYKANVKSIILDDGKAVGVRLADGREFFAKTIISNATRW
DTFGKLLKGEKLPKEEENFQKVYVKAPSFLSIHMGVKAEVLPPDTDCHHFVLEDDWKNLE
KPYGSIFLSIPTILDPSLAPDGRHILHIFTTSSIEDWEGLTPKEYEAKKEEVAAGIIQRL
EKKLFPELSSSITFKEVGTPRTHRRYLARDKGTYGPMPRGTPKGLLGMPFNTTAIDGLYC
VGDSCFPGQGVIAVAFSGVMCAHRVAADIGLERKSKVLDAGLLGLLGWLRTLA
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgtgtcttcacaatccgttaacgtgtgttgatcgcagctcctccttcttctcg
gcctcgaagacttcaaatcacaagctgggtactttaaagttagggtttttaaagcatcgg
aagaagaatcatacggttacagtgagatctgtttcttccacttctgtagaagaaaggacg
aagaagagagatgaaagaagtggaggaggaggagagggacaagtgtacgacgcaatcgtc
atcggctcagggatcggaggcttggtcgcggcgactcagctatcagttaaagaagctaaa
gtgttagtgctggagaagtatctgatccctggagggagctctggttattacgagagagat
gggtacactttcgatgttggctcttccgtcatgtttggtttcagcgataaggggaatcta
aacttgataactcaggcgttgaaggcagttggtcgtgagatggaggttatacctgatccc
accactgttcatttccatctccccgatgatctctctgttcaggttcatagagggtacgat
gagttcgttaacgagcttgttagcaagtttcctcacgagaaggatgggattcttggattc
tatggtgactgctggaagatctttaactcattgaactctttggaactgaagtcgcttgaa
gagcctatctacctttttggacagttctttcagaagccgcttgaatgcttgacactcgct
tattacttgcctcaaaatgctggggatatagctcgcaagtatataaaggatcctcaatta
ctgtctttcattgacgctgagtgtttcattgtgagcacagtcaatgctttgcagacgcca
atgatcaatgcaagtatggttttatgtgacaggcactatggaggaattaactacccggtt
ggtggtgttggtgggattgcaaggtctttagcagaagggcttgttgatcaaggcagtgaa
atactctacaaagctaatgtcaaaagcataatacttgatgatggaaaggctgtcggtgta
aggctagcagatggaagagaattcttcgctaagacgataatttctaatgctacaagatgg
gatacatttgggaagctgttgaaaggagaaaagcttccaaaagaagaagaaaatttccag
aaagtctatgtgaaggctccatcatttctttcaatccacatgggtgttaaagcagaggtt
ctccctccagacacagattgccatcatttcgtacttgaggatgattggaagaatctggag
aagccttatggcagtatcttcctcagcattccaaccattcttgatccatctttggctcca
gatggtcgacatatactccacatatttacaacctcttccatcgaggattgggagggactc
actcctaaagagtatgaggcgaaaaaagaagaggtagcagctggaatcatacagaggcta
gagaaaaaactgtttcctgagctcagttcatctattacgtttaaggaggtgggcacacca
agaacacacaggcgatatcttgctcgggataagggaacttatgggccaatgccaagagga
acaccaaaaggtttactaggcatgccgtttaacacaactgcgatagatggtttgtactgc
gttggggatagttgttttcctggtcagggagttatagctgtggctttctcaggagtgatg
tgtgcgcatcgtgtagctgctgacattgggcttgagagaaaatcaaaggtacttgatgct
ggtcttcttggtttacttggttggctaaggacactcgcatag
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