Raphanus sativus (radish): 108805416
Help
Entry
108805416 CDS
T06014
Name
(RefSeq) nuclear poly(A) polymerase 3
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108805416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108805416
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
108805416
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
108805416
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
NTP_transf_2
MTPAP-like_central
PAP_RNA-bind
UbiA
Motif
Other DBs
NCBI-GeneID:
108805416
NCBI-ProteinID:
XP_018432959
UniProt:
A0A6J0JDK5
LinkDB
All DBs
Position
5:<2426233..2428878
Genome browser
AA seq
507 aa
AA seq
DB search
MTRGGVRYNGFPPYLADTEEECSVSLRQLMVNEGLIPSSEDENKRRIVILKLQKIVVRWV
KSIAWKRRLPQHHINATNATIVPYGSYGLGVHGSQSDIDALCIGPFFATIAEDFFIDLRD
LLKSRAEVSEIHCVKDAKVPLIRFKFDGILVDLPYAQLRLLSIPNNVDVLNPFFLRGIDE
TSWRSLSGVRANQCILQIVPSVELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHMAILAAF
VCGYEPNATLSSLVASFFSTFAYWQWPTPVVLLRDAYAAAGSPPGLMPIQLPCGGRQYCN
SNITRSTFYKIMSEFLRGHHLMKDYLKPSFNWTSLFEPYPYATTYAWFVKIHLSADNQEG
LSDWVGWVKSRFRCLLIKIEEVFGLCDPNPTEYVETCEKQPNIVYYWGLHLGNINVSDIE
TVEMDFLKNVNNRGSFQGTVGGIKLSVVQASQLPTKSVECDRSKNVARTCWRVREDKQCK
NTPVYSRQRPGYVKMSNRDAESTDVKC
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgacaaggggaggcgttcgatataatggttttcctccttacttggctgacacggaagaa
gaatgctctgtttctcttcgtcagcttatggtcaatgaaggactcattccatcttctgaa
gatgagaataaacgaagaatcgtcattcttaagctacaaaagatagtggtgagatgggtt
aagagcattgcttggaaacgacgtcttcctcaacatcatatcaacgcaaccaacgccacc
attgtcccttacggatcctatggtcttggggttcacggttctcaatcagacattgacgct
ttgtgcattggtcctttcttcgcaactatagctgaggattttttcatcgacttgcgtgat
cttttaaaaagcagagccgaagtttccgagattcattgtgttaaagatgctaaagttcct
ctcatacgcttcaagtttgatggcatcttggttgatcttccatacgctcagcttcgactc
ttatcaatcccaaacaatgtagatgtgctgaaccctttcttcttgagaggtattgatgag
acaagctggagaagcttgtctggagttcgcgcaaatcaatgcatccttcaaatagtacct
tccgtggagttgttccaatcattgcttcgttgtgtgaaactatgggcaaagaggcgtggt
gtatacggcaacttgaatgggtttctagggggagttcatatggcgattcttgctgcgttt
gtctgcggatacgaaccgaacgctacgttgagttccctcgtggctagcttcttcagcacg
tttgcttattggcagtggcctacacctgtggtactgctaagggatgcttacgcagctgct
ggctctcctccggggttaatgcctatccagttgccttgcggtggacgtcagtactgcaac
tccaacataaccaggagcacgttttataagatcatgtcagagtttctccgagggcatcat
ttgatgaaggattacttgaagcctagctttaactggacgagcttgtttgagccttaccct
tatgcaacaacgtacgcttggttcgtcaagatacacctctctgctgataaccaggaaggt
ctcagtgattgggtcggttgggttaagtcacgtttccgctgtcttctgatcaaaatagag
gaagtctttggcctttgtgatccaaacccaacagagtatgtggaaacctgtgagaagcag
ccaaacattgtgtattactgggggttacacctcggaaacataaatgtttcagacattgaa
accgtggagatggactttctgaagaatgtcaacaacaggggaagcttccagggaacagtt
ggtggaatcaagttatcagttgtgcaagcctctcagctgcctactaagagtgttgagtgc
gatagaagcaagaacgtggcaaggacgtgctggagagtccgggaagataagcagtgcaag
aacacacctgtttactcaaggcaacggccaggttatgtgaagatgagtaacagagacgct
gagagtactgatgttaagtgttag
DBGET
integrated database retrieval system
