Raphanus sativus (radish): 108805568
Help
Entry
108805568 CDS
T06014
Name
(RefSeq) protein REDUCED CHLOROPLAST COVERAGE 1
KO
K03255
protein TIF31
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
rsz03012
]
108805568
Translation factors [BR:
rsz03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108805568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_10
TPR_12
eIF3_p135
TPR_NPHP3
CLU_N
TPR_2
TPR_9
TPR_8
CLU
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
108805568
NCBI-ProteinID:
XP_018432999
UniProt:
A0A6J0JDP2
LinkDB
All DBs
Position
Unknown
AA seq
1779 aa
AA seq
DB search
MAPKNNRGKTKGDKKKKEEKVLPVMVDVIVNLPDETEAILKGISTDRIIDVRRLLSVNFD
TCHVTNYSLSHEVRGSQLKDTVDVSALKPCVLTLTEEDYNEGTAMAHVRRLLDVVACTTC
FGPSPEKPDSVKNAQVKGGGKNPKQTETSPPPKDAVVDEAGETSHSFPKLGSFYEFFSLA
HLTPPLQYIRLVAKRETEDIAAEDHLLSIDVKLCNGKLVHVEGCKKGFYSVGKQIIISHN
LVDLLRQISRAFDNAYTDLLKAFSERNKFGNLPYGFRANTWLIPPSAAQSPAAFPPLPVE
DERWGGDGGGQGRDGTYDLVPWANEFAFIASMPCKTAEERQVRDRKVFLLHNLFVDVATF
RAIKAVQKVMADPVLADDSQVLFSETVGDLSVTVTRDTSNASSKVDTKIDGIQVTGLDKM
KLMERNLLKGLTADENTAAHDVATLGTISLKYCGYISVVKIEKENEELSPPSQIVDLLEQ
PEGGANALNINSLRFLLHKSSPEQNKKTQQDDELTSSREFVSKMLEESLVKLEKEEIDRD
SIMRWELGACWIQHLQDQKNTEKDKKQTNEKSKNELKVEGLGKPLKSLNGNKKKTDASSP
KAQQTVVSSQVDTASSGADNATITATLQSDAEKNAEENVLVLKNLLSEAAFTRLQESDTG
LHDKSLQELVDLAQKYYTEVAIPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGYVV
KLSDKLSHVQSLCVHEMIVRALKHILQAVISAVAADTDKIAAKVAAALNMMLGIPKNEAE
TPQNSWNVHPLIFQWLEKFLKKRYDYDLNSFSYKDLRKFAILRGLCHKVGIELIPRDFDM
ESPEPFQKTDVVGLIPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVA
VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV
FYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKA
LKCNQRLLGPDHIQTAASYHAIAIALSLMEAYHLSVQHEQTTLRILRAKLGPDDLRTQDA
AAWLEYFESKALEQQEAARNGTPKPDASIASKGHLSVPDLLDYINPSHNAKGKRSVAAKR
KIYMKLKEKSNQNNVSEQLAEAPRENQKEMSEEEIEATGSEDGQSSDANQETILAPAEEL
PSPPVIDEAIMDNSNPITSAEVSTETQHPDGSEDGWQPVHRPRSAGSYGRRLKQRRASIG
KVYTYQKKNVEADNDNPVFQNATQQNPKYYIVKKRTTASYANYADHHSPGMTTQGTKSSR
KVVKTLAYRVKSTQPSSDSPKTTAETSEEDGLKTDASPVVPSGLSSNVQNEAYPKNSVVS
LGKSPSYKEVALAPPGSIAKYQVWAPQAEASDKQADNHVEKKSEQGTSVELPRDAQMITV
SEEEVKNEVSADTESSKPQGKEEIEVELQSSEVEFKGNNLNEDEESGGGIQVEEPVLETN
EGVTDMIHSTTEQEVKDQLAADSDDLKEKLGISATDSSDVPRELLLPNKKLSASAVPFNP
SSPPSIIRPTPIGMNIGPSWPVNMTLHHGPPFPSPPTTPNLMQPMSFVYPPPYTQSVPTS
TYPVTSGPFHPNQFPWPLNMSEFVPRTVWPGCHPVEFSPPHMMAAEPVAATVLEPTVILP
TDIDTSGVEESKQDVAATAGETMDSVNHVNVVASSEMENGNKKFEDDERTFSILLRGRRN
RKQTLRMPISLLNRPYDSQPFKIAYSRVIRGSEAPKSAA
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atggctcccaagaacaaccgtggaaagacaaaaggagacaagaagaagaaggaagagaaa
gttcttccggttatggtggatgtcattgtgaaccttccggacgagacggaggctattttg
aagggcatatcaacggacaggatcatagatgttcgccggcttttatcggttaactttgac
acctgccatgtcaccaactactctctctctcatgaggtaagaggatcgcagttaaaagac
acagtggatgtttcggcgctcaaaccgtgtgttctcacgttaacagaagaggattacaat
gagggaacagcgatggcgcacgtaagacggctgcttgacgtggtcgcgtgtaccacttgc
ttcggtccgtcgccagagaaacccgattcggtgaaaaatgcgcaggttaagggaggtgga
aagaatccgaaacagactgaaacgtcgcctccgccgaaggatgcagtggttgatgaagcc
ggagagactagtcactctttccctaagctcggaagcttctacgagtttttctctctcgct
cacctcactcctcctcttcaatatatacggctcgtggcgaagcgggaaaccgaagatatc
gcggcggaagatcatcttctctccatcgatgtgaagctttgtaacgggaagctcgttcat
gttgaaggctgcaaaaaaggattctacagcgtcgggaaacaaataatcatttctcacaat
cttgttgatttgcttagacagattagtagagccttcgataatgcttacactgatcttctt
aaagcattttcggagcgcaacaagtttgggaatcttccgtatgggtttagagcaaacaca
tggctcatcccgccttctgcagcgcagtcacctgcagcgtttccgcctctccctgtcgag
gatgagagatggggaggtgatggtggtggtcaaggaagagatggcacctacgatttggtt
ccatgggccaacgagtttgcctttatcgcgtccatgccttgcaaaacagcagaggagagg
caagttagagacagaaaagtgtttcttcttcacaaccttttcgttgatgtcgccactttc
agagccatcaaggccgttcagaaagtaatggctgacccagttctggctgatgactctcaa
gttctattttccgagactgttggagacttgagtgttacggttacgagggatacttccaat
gcaagtagcaaagtggatacaaaaatcgacggaattcaagtcactggtttggataaaatg
aagctgatggaacggaaccttctcaagggacttacagctgatgagaacactgctgctcat
gatgttgctactttaggaactataagcctcaagtattgtggctacatttctgttgtcaaa
atagagaaggagaatgaggagttaagcccaccttctcaaattgttgacctccttgaacag
cctgaaggtggtgctaatgctctaaatatcaacagtttgagattccttctccataaatcc
tctcccgagcagaacaagaaaacacaacaggatgatgagcttacatcttcacgagaattt
gtaagtaaaatgctggaggaaagtcttgttaagcttgagaaagaagagatagacagggat
agtatcatgaggtgggaacttggagcctgttggatacagcatttacaagatcaaaagaat
acggaaaaggacaaaaaacaaaccaacgaaaagtctaagaatgaactgaaggttgaaggg
cttgggaagccgcttaagtctctcaacggcaacaagaaaaaaacagacgcaagcagccct
aaggcgcagcagactgtagtatcatctcaggttgatacggcttcttcaggggctgataat
gctacaataactgcaactttgcaatctgacgccgagaagaatgctgaagaaaatgtgctt
gtcttgaagaatttgttgtctgaagctgccttcactcgcctacaagagtcagatactgga
cttcatgacaagtctttgcaagaacttgtcgacttggcacaaaagtattatactgaagtc
gctattccgaagctggttgcagattttggttcgttggaactctccccagtcgatggccgg
actctaactgattttatgcacacaagaggtctccggatgcgctctttaggatatgtcgtt
aagctctcagataagttgtcacatgtacagtctctgtgtgttcatgagatgatagttaga
gcccttaagcatatccttcaagcggtgatttctgctgttgctgctgacactgataaaata
gctgcaaaagtagctgctgctctgaacatgatgcttgggattccaaaaaatgaagcggaa
acaccacaaaactcttggaatgtacatcctcttatcttccagtggttggagaaattcttg
aagaaacgatatgactacgatctcaattccttcagttacaaggatctacgaaagtttgcc
attctccgtggattatgccataaggttggtattgagttgattccaagggattttgacatg
gagtccccagaaccgttccaaaaaacagatgtggtcggtctgatcccagtgcataagcaa
gcagcatgttcgtctgctgatggaaggcaacttctggagtcatctaaaacagcattagac
aaaggaaagcttgaagatgcagttacatatggaacaaaggctcttgctaagcttgtagca
gtttgtggtccctatcatagaatgacagccggagcttacagtttacttgctgtagttcta
tatcacactggtgactttaaccaggctactatatatcagcaaaaggctttagatatcaat
gagagggaacttggacttgatcatccggatacaatgaagagttatggcgatcttgctgtc
ttctattataggcttcagcatacagagctggccctcaagtatgttaagcgtgcgttgtat
ctcttacatctaacatgtggtccatctcatccgaacactgctgctacatacatcaatgta
gccatgatggaggaaggtctaggaaatgtacatgttgccttgaggtatcttcacaaagct
ctcaagtgtaatcaaaggttgcttggtccggaccatatccagactgctgcaagctaccat
gccatagccattgcgctctcgttgatggaagcgtaccatttaagtgttcagcatgagcaa
acaaccttaagaatcctccgagcgaagcttggcccagatgatttgcgtactcaggatgct
gctgcttggctagaatactttgagtccaaggctttggaacaacaagaagctgcacgaaat
ggtactcctaagcctgacgcgtctatagccagcaaaggccacctaagtgtacccgatcta
ctcgactatatcaacccaagccataacgcaaaagggaaacggagtgtggcagcaaagagg
aagatctatatgaagctaaaggaaaaatccaatcagaacaatgtttctgaacagttagca
gaagccccaagggaaaatcaaaaggaaatgtctgaagaggagatagaagcaactggatca
gaagatggtcaatcaagcgatgcgaatcaggagactattcttgcaccagctgaagaacta
ccttctcctccagtcattgatgaggctattatggataatagtaatccaattacatctgct
gaagtttcaactgagacacagcaccctgatggtagtgaagatggatggcaaccggtgcat
agaccgagatctgctggatcatatggtcgccggttgaagcaacgacgagcatcaattgga
aaggtatatacatatcagaagaaaaatgttgaagctgataacgataaccctgttttccag
aatgctactcagcagaaccccaaatactacattgtgaagaagcgtactacagcgtcatat
gcaaactatgcagatcatcattctcccggtatgacaactcaaggcaccaaatctagcagg
aaagtagttaaaaccttggcatatcgggttaaatcaacgcagccgtcttctgatagccct
aaaactacagctgaaacatcagaagaagatgggttgaagacagatgcttctcctgttgtg
ccatctggtctgtcaagtaatgtgcaaaatgaggcatacccgaaaaactctgttgtaagt
cttggaaaatctccatcctacaaggaagtagcattggcaccacctggttccattgccaag
tatcaagtctgggctccacaagccgaagcttcagataagcaagcggataatcatgtggag
aaaaaatctgaacagggcacatctgtggagcttccaagggatgcgcagatgattacagtg
tcagaggaagaagtaaaaaatgaagtttctgcggacacagagtctagcaaacctcaaggc
aaagaagagatcgaagtagagttacaatcatctgaagtggaattcaaagggaacaatttg
aatgaagatgaagaatctggtgggggcattcaggtggaggaaccagtacttgaaactaac
gaaggtgtaacagatatgattcattcgaccacagagcaagaagtgaaagatcagctggct
gctgattccgatgatctgaaggaaaaactgggaatctctgccacagactccagcgacgtc
cctcgagagttattgctacctaacaagaagttatcagcttcagctgtcccattcaaccca
tcatcacctccaagtatcatacgtcctactccaataggcatgaacattggaccgtcgtgg
ccagtgaacatgactcttcatcacggacctcctttcccttcacctcctacaactccaaac
ttgatgcagccaatgtcctttgtataccctcctccttacactcaatcagtccccacaagt
acgtatcctgtaaccagcggtcctttccatcccaatcagttcccatggccgcttaatatg
tcggagtttgtaccaagaacggtttggcccggatgccatcccgttgagttttcccctccc
cacatgatggctgccgagcctgtagctgcaactgtgttagagcccactgtgattctacca
actgatattgacacttcaggagtggaagaaagcaagcaagatgtggcggcaaccgcgggt
gaaactatggattctgttaatcatgtgaatgtagttgctagcagtgaaatggagaatgga
aacaagaaatttgaggatgacgagaggacttttagcattttgttaagaggaagaagaaac
aggaaacagacactgagaatgcccatcagtttgctcaacaggccttatgattctcaacca
ttcaagattgcttatagcagagtcatcagaggcagcgaggctccaaagtccgcagcttga
DBGET
integrated database retrieval system
