Raphanus sativus (radish): 108805667
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Entry
108805667 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108805667 isoform X1
KO
K14794
ribosomal RNA-processing protein 12
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108805667
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
Other 90S particles
108805667
Pre-60S particles
Other pre-60S particles
108805667
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
Ltn1_1st
Motif
Other DBs
NCBI-GeneID:
108805667
NCBI-ProteinID:
XP_056845079
UniProt:
A0A9W3C0Q7
LinkDB
All DBs
Position
6:48430513..48437276
Genome browser
AA seq
1278 aa
AA seq
DB search
MDSLCLDIETGLCLTSSEPDLPVSGDFGEFMLSRLSQSKQPDYKNMCAVINELSKALAED
KHSRTPVAYFAATCSSLDSLLSASNLEEPPLDVIQPHVVILSLVFPKVSAGVLKRNGLAL
RLLLSVLRLRSATPECLISALKCLVHLLGNEVSEAHSTLLNLVTHSDGKVRKLANSCLRD
VLQKSRGTKVCQSVSGNIAELFQRYLDLAHKSEAPSAEGARGAQQVLYLLSTLRECLALM
SRKHIATVIEGFKMLMITRDAFITRPLIDALNALCLNPTSEVPVEALVEVLYHAAVLFSA
PETSADAMTSTARLLKVGMMRAFSLNRDVCVVKLPSVFNGLKDIIASEHEEAIFAATDAL
KSLICSCIDECLIREGVNGIRNSNLDVKKSSPTVIEKLCATVESLLDYKYHSVWDMAFQV
VSTMFNKLGEASSYFMRKTLQDLSDMQNLPDEGFPYRKQLHECVGSALGAMGPDTFLNIV
RLNLEASDLSEVNVWLFPILKQYTVGGRLSFFTETIFRMVETMSHKAQQLKLQGLTAASR
SVDSLVYSLWTLLPSFCNYPMDTMESFEDLGRILCGALQTQAETRGIIWTSLNILIQQNK
EVVEGKDVPVSDASPALVRASARYDSHSAAANLKVIRSCAPKLLDVLSKIFHESGKDDGG
SLQSAIGNLASIAEKKTVSKLLFKTLRELLMVTKTAIAEDESSASGMDVDTTADKNSSSN
LRAKLFDLLVSLLPGLDGQEVDTVFSSLKPAIQDPKGQIQKKAYKVLSVILKSSDGFVSK
NLEELLELMHNICHVSAKRHKLDCLYFLLAYASKTDDLKARKDIVSSFLPEVILALKEVN
KKTRSRAYDVLVQIGHAYADEDNGGDSEKLHGYFNMVVGCLAGEKPQMISAAVKGVARLT
YEFSDLIASAYNLLPSTFLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLL
KWPEGTKNLFKAKVRLLLEMLIKKCGTEAVKSVMPEEHMKLLPNIRKVKERKERKYAAGS
EMSRSQHSKETSSKASRWNDTKIFSDFADEDEDSDGEYMDGEPHGRSKALSLLKSKASAL
SYYRSKKHPRQSHLEVDESDDEPLDLMDRHKTRSALRSSELGKRKADSDEEAEFDAEGRL
IIYEGERAKRKEVSDADSDAKSSKGSRFSVNSSRKNQKRLKTSESGYAYTGKEYASKKAS
GDLKRKDKLEPYAYWPLDRKMMSRRPDQRAVAVRGMSSVVKLTKRLEGKSAAEALATTKV
KMYKKSSQKKSAGKKKSK
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atggattcattgtgtcttgacatcgaaaccggtttgtgcctcacatcctcagagccagac
ctgcctgtatccggtgattttggggagttcatgctctctcgcttatcacaatccaaacag
ccagactataaaaacatgtgcgctgttatcaacgagctatcaaaagctctagcggaagat
aaacatagccggacacccgtggcttacttcgccgccacatgcagctccctagacagcctc
ttgtctgcttcaaatttggaggaaccacctctggatgtcatccagccacatgttgtcatc
ctttcccttgtgttccctaaagtctcagctggagtgttgaagaggaacgggttggctttg
cgtctcctcctcagcgttctgcgtctaagatcagccacgcctgagtgcttgatttcggca
ttgaagtgtttagttcatctgctggggaatgaagtctctgaagcccacagcaccttgctg
aatcttgtaactcattcagatggcaaggtaagaaagctagcaaactcgtgtctccgtgat
gttctacagaagtctcgtggtacaaaggtctgtcaatcagtcagtggaaacattgcagaa
ctgttccagagatatctagacctcgctcataagtcggaagctccttctgccgaaggagcc
aggggggcacagcaagtgctctacctgctcagcactctgagagaatgcttggccttgatg
tcgaggaaacatatagctaccgtgattgagggctttaagatgctgatgattactcgcgat
gcattcattacaaggccattgatagacgctttaaacgcgctttgtctgaatccaacatct
gaggttccagttgaggcgctggtcgaagtgttgtatcatgctgcggtactgttctcggcg
cctgaaacgtctgctgatgccatgacttccacagcacgcttgctgaaagttgggatgatg
agggctttttctctaaacagagatgtttgcgtggttaaacttcctagtgtgttcaatggt
ctgaaagatattattgcctctgaacacgaggaggcaatctttgcagcaacagatgctttg
aagagtttgatatgttcatgcattgatgaatgcttgatcagagaaggcgtcaacggaatc
cggaattcaaacttggatgtgaagaagtctagtccaactgtcattgaaaaactgtgtgca
acggttgaaagcttgcttgattacaagtaccattcagtctgggacatggcttttcaagtt
gtttcgaccatgttcaataaactaggggaagcttcttcatattttatgaggaagaccctc
caggacctatcagatatgcaaaatttacctgatgaaggctttccttataggaagcagttg
catgagtgtgtaggatcagcccttggtgctatgggacctgacacatttttaaacattgtg
cgtttaaaccttgaggcgagtgatctgtctgaggtaaacgtttggctcttcccaattctg
aagcaatacacagtcggaggacggctaagtttcttcacagagactatttttagaatggtc
gaaacaatgagccataaagctcaacagctcaagctacaaggtcttactgcagcatctagg
agtgtggattctctcgtttactcactatggactttgttaccttcgttttgtaattatcct
atggataccatggagagctttgaggatctggggcgaatattgtgtggagctcttcaaacg
caggctgaaacccgtggaattatatggaccagtttgaatattctgattcaacagaataag
gaagttgtggagggtaaggatgtacctgtcagtgatgcaagtcctgctttggttcgagct
agtgctcgttatgattcacacagtgcggcagctaatttgaaagttatacggtcgtgtgct
cctaaattattggatgttttgtcaaagatatttcatgaatctggcaaagatgatggcggt
tctcttcagtctgcgatagggaatttggcttcaatagcggagaaaaagactgtttcaaag
ctacttttcaagacactgcgagagcttttaatggttacgaaaactgccattgcagaagat
gaaagctctgctagtgggatggacgtggatactaccgccgacaaaaattcttcttccaac
cttagggcaaagttgtttgatctgttagtttctcttttacctggtttggatggtcaagaa
gtagataccgtattcagttctttgaagcctgcaattcaggatcccaagggccaaattcaa
aagaaagcgtacaaagttctttcagttatcttgaagagttcggatggatttgtttcaaag
aacctcgaagagttgcttgagctgatgcacaatatatgccatgtctctgccaagcgacat
aaacttgattgcttatacttcctgttagcttatgcgtcaaagacggatgatttaaaggcg
agaaaggacattgtttcttcatttctacccgaagttatacttgctttaaaggaggtaaat
aagaaaacaagaagcagagcctatgacgtgcttgttcagatagggcatgcatacgcagat
gaggataatgggggagacagtgagaaattacatggttacttcaatatggtggttggttgc
ttggccggagaaaaacctcagatgattagtgctgccgttaagggagtagctcgtttgaca
tatgagttctccgatctcatagctagtgcttacaatttgcttccttcaacctttcttctc
ctccagaggaaaaataaggaaatcacaaaagcaaatctaggtttgttaaaggttttggtg
gctaaatcacccgttgaaggactacacgcaaacctaaagagtatggttgaaggcttactg
aaatggccagaaggaaccaaaaacctttttaaggcaaaggtgaggcttctgttggagatg
ctaatcaagaaatgtggcacggaggctgtcaagtctgtgatgcctgaagaacatatgaaa
ctcctgccaaacatccgaaaggtcaaggaacgtaaagagagaaaatatgcagctggctct
gagatgagtagatctcagcattcaaaagaaacttcatcaaaggctagccggtggaatgat
accaagatattttccgattttgcggatgaagacgaggatagcgacggagagtacatggat
ggggagccgcatggccgtagcaaggctctctctttgttgaaatctaaagcatctgctttg
agttattacagatccaagaaacatccgaggcagagtcatcttgaagttgatgagtcagat
gatgaaccgcttgacttgatggaccgacacaaaacaagatcagcccttcgatcaagtgag
cttggcaaacggaaagctgactcggatgaagaggcagagtttgatgcggaagggcggctt
atcatttacgaaggagagagagccaaaaggaaggaagtctccgatgcagattcggatgcc
aagagcagcaaaggtagcaggttctctgtgaactcgtcgaggaagaaccaaaagaggtta
aagacatcagagtctggatacgcttacacagggaaagagtatgcaagcaaaaaggcgagt
ggggatcttaagaggaaagacaagcttgaaccgtatgcgtattggccacttgatcgcaag
atgatgagccgtagaccagatcagagggcggttgcagtcagaggtatgtctagtgtggtt
aagctcacaaagaggttggaaggaaagagcgctgcggaagcacttgccaccactaaggta
aaaatgtacaagaagagtagtcagaagaaatcggctggtaagaagaaaagcaagtaa
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