Raphanus sativus (radish): 108805779
Help
Entry
108805779 CDS
T06014
Name
(RefSeq) protein TRANSPARENT TESTA 9 isoform X1
KO
K19513
protein CLEC16A
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108805779
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108805779
Membrane trafficking [BR:
rsz04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
108805779
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
108805779
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FPL
CLEC16A_C
Motif
Other DBs
NCBI-GeneID:
108805779
NCBI-ProteinID:
XP_018433220
UniProt:
A0A6J0JC87
LinkDB
All DBs
Position
6:44558964..44564252
Genome browser
AA seq
855 aa
AA seq
DB search
MWFSFLRPRDRFSLLELRHLTDQLAKIQIVNGTNKDLVVEALRSIAEILTYGDQHDPSFF
EFFMEKQVMGEFVRILRVSKTVSVSVQLLQTMSIMIQNLTTEQAIYYLFSNEYVNYLITY
TFDFQHEELLSYYISFLRAVSGKLNKHTISLLLKTENDVVVSFPLYVQGIQFAFHEENMI
RTAVRALTLNVYHVGDESVNDYVVSQPHTEYFSKLVSFFQKQCMDLSAMVSNTLKSPSPE
SGGKLFSAVDGIEDTLYYFSDVISAGIPDIERLVTDHILQHLTLPLLLPSLCSEAVNDIS
VDPVTSLYLLCCILRIVKIKDLANLIAATLFCPVKAFISSSLVKPNSSLAPEHPRFGNGH
PDNGVTEEADQQCSSTEVLNEDGDSHVCNENTTKSTFNNSHITFRETLLQYISEGDDVQA
QGSLFVLATLLQTKELEESVLDAFGILPQRKQHKKLLLQALVGEDSGEEQLFSPKNGSMR
DGLSSELDLCLRKLKEQFGVCCSLPGPALCPRVHRHQVVDALVSLLCRENICAETLWDGG
WLLRQLLPYSQAEFNRKHLKMLNDSYEKCKNALTQEIKGTWPDLLIRVLLDEWKKCKKVI
EAPSPQKEPKSVILQLDRSACNDNTVSESSFTAGEKLCEVVKVFVLLHQLKIFSLGRPLP
DQPPIHPPADRSETSRATTTGLDLTVPRPGTEVKLVDAVPCRIAFERGKERNFSFLAISS
GVSGWIVLAEESLLKPDHGTVRVTAPLAGCNPRIDEKHPKWLHLRIRPSTLPFLDPTKRG
VYEKLKSKGLVDGRWTLAFRDDESCHSAYSMVVHEIDLQCTEVERRLQPLIMLDRNPQDQ
SNVTSHAFSSSTSSS
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgtggttctccttcttaagacctagagatcgattctccttgctcgaactcaggcatctg
actgaccagttggcaaaaattcagatagtgaacggcaccaataaggacttggttgtcgag
gcactgagatcaatcgcggagatattaacctatggcgatcaacatgatccctcattcttt
gagttttttatggagaagcaagtcatgggagagtttgtacgtatcttgagggttagcaaa
acagtttctgtttctgtccagttgttgcaaaccatgagtattatgatccaaaacctcaca
actgaacaagccatctactacttgttcagtaacgaatatgtaaactatctgataacatat
acatttgacttccaacatgaagagcttctatcttactacatatccttcctaagagctgtt
agtgggaaactcaacaagcatacaatatcgttgcttctgaagactgagaacgatgtagta
gtttcttttcccctctatgtccaaggcatacaatttgcattccatgaagagaacatgata
cgcactgccgttcgtgccctgactcttaatgtatatcacgttggcgatgaatctgtgaat
gattatgtagttagtcaaccacacactgagtacttttcaaaattagtttcgtttttccaa
aagcaatgcatggatctaagcgcaatggtgtcgaacacgctaaaaagcccgtccccagaa
tcgggtggaaaactgttttctgccgttgatgggattgaggacaccttgtactacttcagt
gatgttatctctgctggcatacctgatatcgagagacttgtaacggatcacattctgcag
catctaactctcccacttcttctcccctctctatgctctgaggctgtaaatgatatatca
gtcgatcctgtcacttctctctatctgctttgctgcatccttcggatagttaaaataaaa
gatttggcaaatcttattgctgctactcttttctgtcctgttaaggctttcatttcaagt
tccctagtaaaacctaatagcagcctggctcctgaacaccctagatttgggaatgggcat
ccagacaatggtgttacggaggaagctgatcaacagtgttcaagcactgaagtcttgaat
gaggatggagattcccacgtttgcaatgaaaatactacgaaaagtaccttcaacaattcg
catattacatttagggagactttacttcaatatatttctgagggggatgatgtgcaagct
cagggttccttgtttgtgctagccactttgttgcagacaaaagaacttgaagagtcagtg
ctagatgctttcggcattcttcctcagcgtaagcagcacaaaaaactattactgcaagct
ttggttggggaggactctggtgaagaacaactattttcaccgaaaaacggttctatgaga
gatggcttaagtagcgaacttgatttgtgtctacggaagctgaaggagcagtttggagtt
tgctgttcattgcctgggcctgcattgtgcccccgtgtacatagacatcaggtggtggat
gcattggtcagtcttctctgccgtgaaaacatatgtgcagaaacattatgggatggagga
tggcttttacgccaattgcttccttatagccaggctgaatttaatcgcaaacatctcaag
atgctaaatgattcatatgagaaatgcaaaaatgcactaacccaggagatcaaaggcaca
tggcctgatctactcataagggtactgcttgatgaatggaaaaaatgcaaaaaagtgatc
gaagctccatcccctcaaaaagagcctaaatctgttattctccagctggatagatccgct
tgtaacgataacactgttagcgaatcatcattcacagcaggtgaaaaattgtgcgaggtg
gtaaaggtttttgtgcttcttcatcaactcaagatcttctcgcttggtaggcccttgcca
gatcaacctcctatccatcctcctgccgatagatctgaaacgtctcgtgccacaactact
ggtttggatcttacagttcccagacctggcaccgaagtgaagctagttgatgcagtaccc
tgtaggattgcttttgaaagaggcaaggagcgcaatttctcgtttctagcaatatcatct
ggtgtgtctgggtggattgtccttgctgaagagtcacttttgaaaccagatcatggaacc
gtccgtgttaccgcacctctagccggctgcaatcctcgaatagatgaaaagcacccaaaa
tggctacacttgagaatacgaccatcgacgttacctttcttggatccaacaaagcgagga
gtatatgagaagctcaagtccaaaggcctagtagacgggagatggacattagcattcaga
gacgatgaatcctgtcactctgcttactctatggttgtacatgagatcgatctacagtgc
acagaggttgaaagaaggttacagccattgattatgcttgacagaaacccgcaagatcaa
tcaaacgttacttcacatgccttctcttcatcaacttcgtctagctga
DBGET
integrated database retrieval system
