Raphanus sativus (radish): 108805945
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Entry
108805945 CDS
T06014
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1A-like isoform X2
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
rsz04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
108805945
04120 Ubiquitin mediated proteolysis
108805945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108805945
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108805945
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108805945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-RING_11
zf_RING_Vps8
zf-RING-like
Motif
Other DBs
NCBI-GeneID:
108805945
NCBI-ProteinID:
XP_018433438
UniProt:
A0A6J0JF22
A0A6J0JCU8
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MIRLRTYACLSFIATLSIIHHAFSTRGQFYPAAVYLSTSKISLMLLLNMCLVLMLALWHL
VKLLFLGSLREAEIERLNEQAWRELMEILFAITIFRQDFSSGFLPLVVTLLLIKALHWLA
QKRVEFIETAPNVSRLAHVRIVSFLAFLLVVDSIFMYSSVRHLVRSRQASVSLFFSFEYM
ILATTTVAIFVKYVFFVTDMIMDGQWEKKPVYTFYLELIRDLLHLSMYICFFFVIFMNYG
VPLHLLRELYETFRNFQIRVSDYLRYRKITSNMNDRFPDATPEELTASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQQTCPTCRALVVPPENGTSTTAAGQRGLHQGSQQGTSS
SGGQGSETRSSAGGSNDSLSRHHARLQAAASAASMYGKSMVYPSADKVAWSPGFPGTVKA
SAEPHGTHPSSSSAASQLPQQNLPGENSRAYANIPADKLETMKKSLESQLETLRNRLQFL
ESTGEADDKGKRVVDRCDRAAE
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgatccgattaagaacctacgcatgcctcagcttcatcgcaaccctctccataatccac
cacgccttctccacccgaggccagttctacccggccgccgtctacctctccacctccaag
atcagcctaatgctcctcctcaacatgtgcctcgtcctcatgctcgccctctggcacctc
gtcaagctcctcttcctcggctccctccgcgaagccgagatcgagcggctcaacgagcag
gcatggagagagctcatggagatcctcttcgccatcaccatcttccgccaagacttctcc
agtggcttcctcccccttgtcgtcacgcttctcctcatcaaggccttgcactggctcgct
cagaagcgagtcgagttcatcgagacggctcctaacgtctccaggctcgctcacgttcgt
attgtttcatttttggcgtttcttcttgttgtggattcgatctttatgtatagctcggtt
cggcatttggttcggtctaggcaggcctccgtttctctcttcttctctttcgagtatatg
attttggcgacgacgacggtggcgatttttgtgaagtatgtgttctttgttactgatatg
attatggatggtcagtgggagaagaagcctgtttatactttctatcttgagcttatccgt
gacctgcttcatttgtcaatgtacatttgcttcttctttgtcatcttcatgaactatggt
gtgcctttgcatttgttgagagagctttatgagaccttcaggaacttccagattcgtgtt
tctgattaccttcgttatcgtaaaatcacttccaatatgaacgacaggttccctgatgca
actcctgaagaacttactgcaagtgatgccacatgtatcatatgccgtgaagaaatgaca
actgcgaagaagctgatatgcgggcatctcttccatgtacattgtcttcgatcatggttg
gaacgacagcagacatgtccgacttgcagggcacttgttgtacctcctgagaatggcaca
tctactacagctgcagggcaacgaggattgcaccaaggttctcagcaaggtacttcaagc
tcaggtggccagggatctgaaacgcgttcttctgctggcggttccaatgatagtttgagc
aggcatcacgccagacttcaagcagctgcttctgcagcctccatgtatgggaagtcaatg
gtgtatccatctgcagacaaagtagcatggtcgccgggttttcctggtacagtgaaagcc
tcagcagaaccacatggaacccatccttcatcatcctcagcggcttctcagcttcctcaa
caaaaccttcctggtgaaaactctcgtgcctatgcaaatatcccagcggacaagctggaa
acgatgaagaaatctctggagagccagctcgagactttgcgaaacagacttcagtttctg
gagtccacaggagaagcagatgacaaagggaagagagttgttgatcgatgcgacagagca
gcagagtga
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