KEGG   Raphanus sativus (radish): 108805983
Entry
108805983         CDS       T06014                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108805983
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsz03021]
    108805983
   03036 Chromosome and associated proteins [BR:rsz03036]
    108805983
Transcription machinery [BR:rsz03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108805983
   Coactivators
    SAGA/TFTC/STAGA complex
     108805983
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108805983
    STAGA complex
     108805983
    TFTC complex
     108805983
    SAGA complex
     108805983
    SLIK complex
     108805983
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 TFIID_NTD2 Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_IFT122_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_Aladin WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_HPS5 Nbas_N Tricorn_2nd Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 eIF2A RAB3GAP2_N Cytochrom_D1
Other DBs
NCBI-GeneID: 108805983
NCBI-ProteinID: XP_018433495
UniProt: A0A6J0JD08
LinkDB
Position
6:14160637..14164713
AA seq 638 aa
MDPEQVDEFVMGYLKKKGFNNGTRFSSIDYHNDPDLTKLIRSFSQSENDPSRYREGYSKL
RSWGDNSLDLYKHELLRVIYPVFIHCYINLVGKGHTQEARAFFNSFRKDHEMVHLRDLQK
LEGVLAPSHLQEMEFARSLRQSKFNIKICQCSYDLLLQYLHRTESTLMLGIINERINFQV
YSGQPNSASDDIESVTISGSFHETADHVNQKEIHWGLLEDRLQKTGGLLSDSEKGQGESK
ADSKKRSSEIGKQGSSVKKLKKDKAGNATAKVARQETSMALSTTPRVKPELAMPVMSTDV
EESILEDLRNRVQLSSLAMPSVSFYTFVNTHNGLNSSSISHDGSLVAGGFSDSSIKVWDM
AKIGQAGSCALQDENGGRNYTLLLGHSGPVYSATFSPPGDYVLSSSADTTIRLWSTKLNA
NLVCYKGHNHTVWDAQFSPFGHYFASFSHDRTARIWTMDRIHPLRMMAGHLSDVDCVQWH
PNCNYIATGSSDKTVRLWDVQTGECVRIFVGHRSMVLSLAMSPDGRYMASGDEDGTIMMW
ELSTARCITPLIGHNSCVWTLSYSGEGSLLASGSADCTVKLWDVSSSTKLTKAEEKNGNS
NRLRSLRTFPTKSTPVHALRFSRRNLLFAAGPTSKPAS
NT seq 1917 nt   +upstreamnt  +downstreamnt
atggatccagagcaagtagacgagttcgtcatgggttacttgaagaagaaaggcttcaac
aacggcaccaggttcagctccatcgattatcacaacgatccagacctcaccaagctcatc
cgctccttttcccaatcagagaatgatccatctcggtaccgtgagggatacagcaagcta
aggtcatggggtgataactcactggacctttataagcatgagttgctccgagtgatatat
ccagtgtttattcattgttacataaatctagtggggaaagggcacactcaagaagcgaga
gccttctttaacagcttccgcaaagatcatgaaatggtacatctacgggatcttcagaag
ctggaaggcgttcttgctccatctcatctacaggagatggagtttgctcgttctcttaga
caaagcaagttcaacattaaaatttgtcagtgttcgtatgatctgttacttcagtatcta
catagaacagaatctactttaatgcttggtattataaacgagcgcatcaatttccaagtc
tactcaggacagcctaactccgcatctgatgacatagagtctgtcaccatttctgggagt
tttcatgagacagctgatcacgtcaatcaaaaagaaatacattggggattgcttgaagat
cgcctccaaaagacgggaggtctactctctgattccgagaagggacaaggagaaagtaaa
gctgatagtaagaaaagatccagcgaaattggaaagcaaggctcttccgtaaagaagtta
aagaaggacaaagcaggaaatgcaacagcaaaagttgcacgtcaggagaccagcatggcc
ttgtcgacgacaccacgtgtgaaaccggaacttgccatgccagtaatgtctacggatgta
gaggaatccatccttgaagacctgagaaaccgtgtgcagctgagtagtctcgcaatgcca
tctgtcagcttttatacatttgttaacactcataacgggttaaacagttcatctatatct
catgatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggacatg
gcgaagataggacaagctggcagttgtgctttgcaggatgaaaatgggggaagaaactat
acactattactgggtcactcagggccagtttactctgccactttcagtcctcccggagac
tatgttttatcttcttcagcagatacaacaataaggctgtggagcacaaaactaaacgcc
aatctcgtctgctacaagggtcataatcacaccgtatgggatgctcagtttagccctttc
gggcattacttcgcaagcttttctcatgatcgtactgcccggatatggacaatggaccga
atacatcctctgcggatgatggcaggtcatctatctgatgttgattgtgttcagtggcat
cccaattgcaactacattgcaaccggttccagtgataagacggttagactatgggatgtc
caaacaggggaatgtgtcaggatcttcgttggacacaggagcatggttttgtcattggcg
atgtcaccagatgggagatatatggcttctggtgacgaagatggaaccataatgatgtgg
gaactctcaacagctcgctgcatcacacctctcattggccataattcatgtgtctggact
ctctcttacagtggagagggctctcttctggcttctggatctgcggactgcacagtgaaa
ctgtgggacgtctcctcaagtaccaaattgacaaaggccgaggaaaaaaacggcaactca
aacagactgcgatcactcagaactttccccacaaagtccacacctgttcacgccctccga
ttttctcggagaaatctcttgtttgctgcaggaccgacctctaaacccgcaagctga

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