Raphanus sativus (radish): 108806311
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Entry
108806311 CDS
T06014
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Module
rsz_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108806311
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108806311
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Pectate_lyase_4
Nab2-zf4
Cytomega_UL20A
NosD
Motif
Other DBs
NCBI-GeneID:
108806311
NCBI-ProteinID:
XP_018433890
UniProt:
A0A6J0JE50
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Position
6:52037066..52040062
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AA seq
387 aa
AA seq
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MANNIMLFFILFYLINSSNAMPSFNVQRYGAKGDGRTDATEPFLTAWSLACGSRTRAMVY
IPRGTYLVRNLVFWGPCKNIITFKIDGKLVAPANYWSIGSSGYWILFAKVNRISVIGGTI
DARGAGYWSCRKKGGHCPQGARSISFSWCNNVLLSGLTSLYSQTIHVTIHHSSNVRIQNI
RIRAPSGSPNTDGIIVQASSGVTISGGVIATGDDCIALNQGSKNIWIERLNCGPGHGISI
GSLGEYANEEGVQNITVTNSIFTRTQNGVRIKAWARPSNGFVKNVQYRNLVMRNVENPII
IDQNYCPNGKGCPNQSSGVKISGVTYSNIKGTSITPIAMRLECSGSHPCTGITLKNINLK
YMRKSSASYCKNAHGRASGVMIPRNCM
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atggccaataacatcatgttattcttcattcttttctatcttatcaactcatcaaacgca
atgccatcatttaacgtacagagatacggagctaaaggtgatgggagaacagacgcgacc
gaaccatttttgacagcttggtcattagcatgtggctcaaggactcgagccatggtctac
atcccccgtggaacatacttggttagaaatctagtcttttggggtccttgcaagaacatt
ataactttcaaaatcgatggaaaactcgttgctcctgcaaattactggagtataggtagt
tctggttactggatcctattcgctaaagtaaaccggatctcggttattggtggaaccatt
gatgccagaggagctggttattggtcttgtagaaagaaaggtggtcattgtcctcagggt
gcaaggtctatctcgtttagttggtgcaataacgttctactaagtggcttaacatcgttg
tatagtcagactattcatgtcacgattcatcattcttctaatgttcggattcaaaatata
agaattagggctccaagtggtagccctaatactgacggtattatcgtccaggcttcttct
ggagtcaccattagtgggggagtcattgcgaccggtgatgactgcattgctctaaatcaa
ggatctaagaacatttggatcgaacgcttgaattgtggacccggacatggaatcagcatt
gggagtcttggggaatacgctaacgaggaaggagtgcagaatattactgtcacgaactct
attttcaccaggacgcaaaacggagtcagaataaaggcttgggccaggccgagcaacggg
tttgtgaagaatgtgcaatatcgaaacttggtgatgaggaatgtcgagaatccaattatc
atcgatcaaaactattgcccaaatggaaaaggctgccctaaccagagctctggtgtgaag
ataagtggagtgacctactcaaacataaaaggaacatcaataacgccaatagcaatgaga
ctggaatgtagtggaagccatccttgcacagggattacattaaaaaacataaacctcaag
tacatgagaaagtcatcagcttcttattgcaaaaacgctcatggacgagcatctggagtt
atgattccaaggaattgtatgtga
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